PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042518
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 507aa    MW: 56393 Da    PI: 5.0997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042518genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.81.9e-312373616128
          NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                  rF P+de l+++yLk+k+ g++ ++ + i+evdi++ ePwdL p +v+ e+   e y+F++r++  ++++r +r+t +gyWk tgk +++++  +ge+
  Lus10042518 237 RFCPSDERLINHYLKQKMLGNEDQV-DQIPEVDILSREPWDLlPITVDDEQCykEAYYFCRRRSYFKSKDRYKRTTGDGYWKPTGKPRHIKNGaNGEV 333
                  9*********************999.88**************44544433224488*******99999***********************9879999 PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  +g k+ Lvf+ gr+  g++t  +mhey++
  Lus10042518 334 IGSKRCLVFHFGRSV-GQSTGYTMHEYSA 361
                  **********88875.69*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.215232381IPR003441NAC domain
SuperFamilySSF1019415.49E-37237381IPR003441NAC domain
PfamPF023651.4E-17237360IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLNTLVPPPP QVFSDQLPIL GSGMNSGYIL PTSPNNVFDI GDERLMSHYS INGSNLILPT  60
SPNIFLHCED NLICPTDERL MSHYPMNGSN LVLPTSPNNF LNGEDDEIRR PNKRLMSHYP  120
DNGSNFKLPT SPNNFFSGMD NPACPPTVNN YRTDGSSLVL LPTSPNTILN SPTGEILTNH  180
YSSDGSSVVL PTSPNSFLIS QDNPNCPTGE RLKSHYPTYR STPTSPNNFL GGKEDNRFCP  240
SDERLINHYL KQKMLGNEDQ VDQIPEVDIL SREPWDLLPI TVDDEQCYKE AYYFCRRRSY  300
FKSKDRYKRT TGDGYWKPTG KPRHIKNGAN GEVIGSKRCL VFHFGRSVGQ STGYTMHEYS  360
AAAASSSQPV VDLVLCKVMK KSNKTKAATK RKAKTVLVSQ PPSDENVNTI TTAPLQTAEE  420
PPAICQMDSN FGNQDTITPT SQSPSTQNDG GIEDFSEIEL EIDGEIFRLP GVDFKFDFEP  480
WDKLQQQQQP PPLEAEYFPG MVQQSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-1823738622170NO APICAL MERISTEM PROTEIN
1ut4_B3e-1823738622170NO APICAL MERISTEM PROTEIN
1ut7_A3e-1823738622170NO APICAL MERISTEM PROTEIN
1ut7_B3e-1823738622170NO APICAL MERISTEM PROTEIN
3swm_A3e-1823738325170NAC domain-containing protein 19
3swm_B3e-1823738325170NAC domain-containing protein 19
3swm_C3e-1823738325170NAC domain-containing protein 19
3swm_D3e-1823738325170NAC domain-containing protein 19
3swp_A3e-1823738325170NAC domain-containing protein 19
3swp_B3e-1823738325170NAC domain-containing protein 19
3swp_C3e-1823738325170NAC domain-containing protein 19
3swp_D3e-1823738325170NAC domain-containing protein 19
4dul_A3e-1823738622170NAC domain-containing protein 19
4dul_B3e-1823738622170NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042518
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100425180.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.13e-27NAC domain containing protein 60