PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GATA | ||||||||
Protein Properties | Length: 218aa MW: 22751.6 Da PI: 5.7034 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.4 | 1.7e-17 | 169 | 202 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C C++++Tp+WRrgp g+ktLCnaCG++y k+ Lus10042504 169 CMLCNVSETPMWRRGPHGPKTLCNACGIKYHKEA 202 777***************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.42E-13 | 161 | 204 | No hit | No description |
SMART | SM00401 | 1.3E-11 | 163 | 211 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.97E-11 | 168 | 196 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 168 | 204 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.754 | 169 | 198 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 169 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MMKKLDLNLK LSLSTHASES IDIPDDTPNN FDSKSPFTFD FGSPKANIPQ DVETDLRIGS 60 GSGGVNQQYG YAAPASGGTT VVGVPAVAVY MNQMELVNNN EPILQLAPPG DDLNEGGESS 120 DSNSNSAPAA APAALPVPPA APAALPVPPA ALPANFFNGM MTRQIQNVCM LCNVSETPMW 180 RRGPHGPKTL CNACGIKYHK EAKKKKEREG GSTSGSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042504 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10042504 | 1e-159 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13778 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 4e-10 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10042504 |