PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042498
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family DBB
Protein Properties Length: 302aa    MW: 32798.8 Da    PI: 5.5994
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042498genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52e-06447542
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  Lus10042498  4 QCNVCEAAEAKVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                 7******99*********************66899999999986 PP
2zf-B_box284.4e-095390237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                 + +kC+ ++e    +fC +++ llC++C +++H    H
  Lus10042498 53 QLPKCDICQEMAGLFFCLEDRALLCRKCDVAIHTAneH 90
                 679*******99*********************55553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.765147IPR000315B-box-type zinc finger
CDDcd000216.68E-8347No hitNo description
SMARTSM003361.8E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501198.6745299IPR000315B-box-type zinc finger
SMARTSM003361.4E-125299IPR000315B-box-type zinc finger
PfamPF006432.9E-65390IPR000315B-box-type zinc finger
CDDcd000211.24E-75599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSNS SPQLPKCDIC  60
QEMAGLFFCL EDRALLCRKC DVAIHTANEH VSVHQRFLLT GVKVGLEPTD PVGSSSSAKS  120
LSGEKMSGTK TDFVSGRVSS MPFASSSNYA PSVDGMRSSE PLKVPFAEGN NAGAIQQWQL  180
DDLFSLTGFN QNYSYVGNGS SKADSGKRSE SENSAMMRSG EDEMDYGECL GQASESCWAV  240
PEMPSPPTAS GLCWLKSSRE HCDVEDFVPD IRCSGAKTDH DDAKEHTRVP KRPRQQHWTL  300
Y*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042498
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084355.11e-131B-box zinc finger protein 22 isoform X3
RefseqXP_012084356.11e-131B-box zinc finger protein 22 isoform X4
SwissprotQ9SYM22e-90BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A067JXZ21e-129A0A067JXZ2_JATCU; Uncharacterized protein
STRINGLus100424980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-89light-regulated zinc finger protein 1