PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042466
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 376aa    MW: 43247.1 Da    PI: 6.7187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042466genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.5e-50131461129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  l+pGfrFhP+deelv++yL +k++ ++  +   + evd++++ePwdLp++++ + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++v+++   
  Lus10042466  13 LAPGFRFHPRDEELVCDYLFNKITFSRSLF---FIEVDLNSCEPWDLPETTRVGGKEWYFYSRRDRKYATGLRTNRATASGYWKATGKDRAVIRNevs 107
                  579*********************999544...679************9888999**************************************99899 PP

          NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +++lvg++ktLvfy+grapkg+ktdWvmhe+rle
  Lus10042466 108 inkqrQQQLVGMRKTLVFYQGRAPKGHKTDWVMHEFRLE 146
                  988777777***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-566172IPR003441NAC domain
PROSITE profilePS5100554.23713172IPR003441NAC domain
PfamPF023652.1E-2515145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSVSKIRMVE AKLAPGFRFH PRDEELVCDY LFNKITFSRS LFFIEVDLNS CEPWDLPETT  60
RVGGKEWYFY SRRDRKYATG LRTNRATASG YWKATGKDRA VIRNEVSINK QRQQQLVGMR  120
KTLVFYQGRA PKGHKTDWVM HEFRLEGPLA RPRTTASSHN KEDWVLCRVF YKDKEAFNSK  180
QSKIGILRNN NINSNNSYED DDDDYVENED SSSSHLPPLT DSSYNITFGH HQQQPIVLGN  240
CLNDDQYEQV PCFSILSQKA LSSPSVIPQF NFSHHHDIND NNLITTATTA VSDASLIFPI  300
DHHHVINNDH LEDHDTLSNC DKKVMKEVLN HLTKVESTSY NNYNYQLYSS SLSLVEGSPE  360
SYLSEVGIAN IWNRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-44817612169NO APICAL MERISTEM PROTEIN
1ut4_B1e-44817612169NO APICAL MERISTEM PROTEIN
1ut7_A1e-44817612169NO APICAL MERISTEM PROTEIN
1ut7_B1e-44817612169NO APICAL MERISTEM PROTEIN
3swm_A1e-44817615172NAC domain-containing protein 19
3swm_B1e-44817615172NAC domain-containing protein 19
3swm_C1e-44817615172NAC domain-containing protein 19
3swm_D1e-44817615172NAC domain-containing protein 19
3swp_A1e-44817615172NAC domain-containing protein 19
3swp_B1e-44817615172NAC domain-containing protein 19
3swp_C1e-44817615172NAC domain-containing protein 19
3swp_D1e-44817615172NAC domain-containing protein 19
4dul_A1e-44817612169NAC domain-containing protein 19
4dul_B1e-44817612169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021644348.11e-113NAC domain-containing protein 21/22-like isoform X1
TrEMBLA0A0M4FBQ81e-111A0A0M4FBQ8_MANES; NAC transcription factors 40
STRINGLus100424660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.28e-86NAC domain containing protein 1