PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10042284

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 300aa MW: 34373.9 Da PI: 5.2236

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10042284	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.4	8.2e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+s + Lus10042284 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELSeKsFLPSKDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVVS-Q 101 79**************************.99**********84335556788**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLv+y+grap+g +tdWvmheyr+ Lus10042284 102 TRVIGMKKTLVYYRGRAPQGLRTDWVMHEYRV 133 99**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.161	6	156	IPR003441	NAC domain
Pfam	PF02365	3.6E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWE LSEKSFLPSK 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVVS QTRVIGMKKT LVYYRGRAPQ 120 GLRTDWVMHE YRVDDKDCED TSGLQDSYAL CRVFKKNGIC TETAEQEIQQ SFVYGGATSS 180 SAARRNRTSP AAIMETSPDA AMNHDINHLM IDQYNNYDST MSPDVPVNAS SSSCLEDEEK 240 DVDDNSWMQF ITDDDPWSSS SMVNGGDDVT YQQQQPQVHH NHHQQHHRQV SANTSTFTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-54	4	157	13	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10042284

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374257.1	1e-132	NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	3e-89	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	U5FPE3	1e-131	U5FPE3_POPTR; Uncharacterized protein
STRING	Lus10042284	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9564	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-122	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Lus10042284

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]