PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042243
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 490aa    MW: 53928 Da    PI: 8.2485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042243genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.2e-33211269260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+ ++d++++ei+Y+g+Hnh+k
  Lus10042243 211 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVEKRSSDGQITEIVYKGSHNHPK 269
                  8********************************************************85 PP
2WRKY104.36.5e-33392450159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d k v++tYeg+Hnh+
  Lus10042243 392 LDDGYKWRKYGQKVVKGNPNPRSYYKCTYIGCPVRKHVERASTDMKSVITTYEGKHNHN 450
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-30201270IPR003657WRKY domain
PROSITE profilePS5081126.142205270IPR003657WRKY domain
SuperFamilySSF1182903.4E-26205270IPR003657WRKY domain
SMARTSM007746.6E-36210269IPR003657WRKY domain
PfamPF031062.4E-25211268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-36377452IPR003657WRKY domain
SuperFamilySSF1182905.49E-29384452IPR003657WRKY domain
PROSITE profilePS5081137.252387452IPR003657WRKY domain
SMARTSM007741.4E-37392451IPR003657WRKY domain
PfamPF031062.6E-25393449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MASSSDTSHH HHTFTFSSHP FMTNSATTFS DLLSDHPPPP PPDSHRHRGG GLSDRIAERT  60
GSGVPKFKSI PPPSLPISPP FSPSSFFAIP PGLSPAELLD SPVLLSSSHI LPSPTTGTFP  120
AQAFWTNPNS IQSHRRNVKQ EAAEDKISSD FSFHQTVQSH QQEDWSYQEA KRKEDESSFQ  180
SFSPEIATIQ AAPAAPPPRQ YQSVREQRRA EDGYNWRKYG QKQVKGSENP RSYYKCTFPN  240
CPTKKKVEKR SSDGQITEIV YKGSHNHPKP QSKQRSSSAA SSVTTASNSQ AIHHPAQSYD  300
QIQEHSFGTT THGSGQMDTP ENSSISIGGG DDDFDSHRSG RDEIDEDEPD AKRWRRDVEN  360
DGISSSSMAA TGNKAVREPR VVVQTRSDID ILDDGYKWRK YGQKVVKGNP NPRSYYKCTY  420
IGCPVRKHVE RASTDMKSVI TTYEGKHNHN VPAARGSSHP STNRMGQSGA AGEQYYCTIG  480
EKAADGATT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-34202453878Probable WRKY transcription factor 4
2lex_A1e-34202453878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042243
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9312306e-36EU931230.1 Rheum australe WRKY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723124.11e-177PREDICTED: probable WRKY transcription factor 26
SwissprotQ6B6R41e-119WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A3G1KLG90.0A0A3G1KLG9_LINUS; WRKY transcription factor 36
STRINGLus100422430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-98WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]