PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042102
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 158aa    MW: 18380.6 Da    PI: 9.4211
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042102genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.43.3e-10911252155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yp+++++ eLA+++gL+++q+ +WF N+R ++
  Lus10042102  91 KWPYPTETDKLELAESTGLDQKQINNWFINQRKRH 125
                  569*****************************985 PP
2ELK28.43.6e-104565121
          ELK  1 ELKhqLlrKYsgyLgsLkqEF 21
                 ELK+ Ll KY+gyL+ LkqEF
  Lus10042102 45 ELKDKLLDKYGGYLSRLKQEF 65
                 9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121310.6854565IPR005539ELK domain
SMARTSM011881.1E-54566IPR005539ELK domain
PfamPF037892.1E-74565IPR005539ELK domain
PROSITE profilePS5007112.79565128IPR001356Homeobox domain
SMARTSM003893.1E-1267132IPR001356Homeobox domain
SuperFamilySSF466893.08E-2067140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2770130IPR009057Homeodomain-like
PfamPF059202.0E-1785124IPR008422Homeobox KN domain
CDDcd000862.03E-1191128No hitNo description
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MMYSTNGYNN NVGGGGSSDE DIIMTGGSEV VDGRSHQQLN KEERELKDKL LDKYGGYLSR  60
LKQEFTKKKK KGKLPKEARL LLLNWWNLHY KWPYPTETDK LELAESTGLD QKQINNWFIN  120
QRKRHWKPTE NMHSSVMDTL YGSSVSDQCY PSHHHRY*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042102
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068158.13e-54homeobox protein knotted-1-like 6
SwissprotQ84JS68e-46KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A498I2641e-53A0A498I264_MALDO; Uncharacterized protein
STRINGLus100421021e-114(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.16e-42KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]