PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042017
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 268aa    MW: 29607.1 Da    PI: 8.2507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042017genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-1394140354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+ve +k+L
  Lus10042017  94 QNHKEAEKRRRERINSHLDKLRALLPCN-----SKTDKASLLAKVVERVKEL 140
                  68*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1487146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65691140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-1194140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-1394143No hitNo description
Gene3DG3DSA:4.10.280.104.7E-1495148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-1297146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.2E-4177247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASQVKSYLF RLLAAENGSA FQQHPLQTSS SFIGNNNSTC IDSQASSSCD YSNDHQYYHH  60
HHHHQLSAGS GSAITAGENS RTTTPQDRAY AALQNHKEAE KRRRERINSH LDKLRALLPC  120
NSKTDKASLL AKVVERVKEL RQQTSEIHGL DTFPSELDEI TVAEEYGGGG RNNNMVYRAS  180
VCCEDRSELL PELIEIFKAL HLKTVRAEMV TLGGRTRSVL MVAPAEDHAG VESIHFLQAA  240
LKSLLERSNI SGGGTNEPSK RRRLLKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259263KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084522.12e-85transcription factor bHLH106
SwissprotO806742e-64BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A067K5D05e-84A0A067K5D0_JATCU; Uncharacterized protein
STRINGLus100420170.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]