PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041961
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 267aa    MW: 30128.7 Da    PI: 9.9838
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041961genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543.1e-17696197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ffk+ ++s+  +++ l lpkkf+++hg++   ++++ ++ ++g++We+ +  rk+ ++ +++++GW+ F+    ++    +vFk++g+s+f  +v+++
  Lus10041961  6 FFKIILQSSIDENK-LHLPKKFLKKHGNE--LGTKVLFKVPDGKTWEIVV--RKTYDGvTWFSQGWSAFAARYSIRYAYLLVFKYKGDSCF--HVRIY 96
                 89999999999998.***********955..899****************..6666666********************************..88876 PP
2B346.66.2e-151832621798
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++p kfa++h g +e+s ++++ ++ +++W ++l  r+ +g+  l+ GW +F  +n+L+ gD+++F+l++  ef ++ ++fr
  Lus10041961 183 YVPGKFANAHLG-PECSYMIVFDSRGSKEWVIRL-NRRERGGLNLGLGWGDFRAENDLRPGDVCLFELVNPGEFFMKSHIFR 262
                  689****99955.57*******************.4666666**************************98888878888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-224101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-225101IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-13696IPR003340B3 DNA binding domain
CDDcd100172.27E-17696No hitNo description
SMARTSM010193.4E-16699IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-15160255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17161256IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.335167264IPR003340B3 DNA binding domain
SMARTSM010192.6E-6167264IPR003340B3 DNA binding domain
PfamPF023627.8E-13183263IPR003340B3 DNA binding domain
CDDcd100179.62E-8183262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGSRNFFKII LQSSIDENKL HLPKKFLKKH GNELGTKVLF KVPDGKTWEI VVRKTYDGVT  60
WFSQGWSAFA ARYSIRYAYL LVFKYKGDSC FHVRIYAPNA CEIVYPAGDD HRPPNVAVKN  120
EVGEGSGSGV RIETIVATSF KQIRNKATGS EKRTINAAME LSLKNPSWTL VIKPYNFVLP  180
VGYVPGKFAN AHLGPECSYM IVFDSRGSKE WVIRLNRRER GGLNLGLGWG DFRAENDLRP  240
GDVCLFELVN PGEFFMKSHI FRVSDH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041961
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100419610.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-18B3 family protein