PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041803
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 118aa    MW: 11760.7 Da    PI: 4.1134
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041803genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70245.62.5e-14133120151
       DUF702 120 vssvddgeee.laYqtavsigGhvfkGiLydqG 151
                  +s+vdd++++ +aYqtavsigGh+fkGiLydqG
  Lus10041803   1 MSGVDDSDAQqYAYQTAVSIGGHTFKGILYDQG 33 
                  689***77655*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016241.0E-15133IPR006511Lateral Root Primordium type 1, C-terminal
PfamPF051422.6E-11133IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MSGVDDSDAQ QYAYQTAVSI GGHTFKGILY DQGRLGGGES SSYMAATTDT SSASGVQPLN  60
LITTAASASA SASSNIGSGG VTSNAAGASY LDPSSLYTAV PLSNYMAGTQ FFPNNPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041803
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028610.11e-26PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD402e-20SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLB9T5Y41e-24B9T5Y4_RICCO; Transcription factor, putative
STRINGLus100418035e-77(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-20Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]