PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041723
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 520aa    MW: 54408.2 Da    PI: 8.1587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041723genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-057294123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Lus10041723 72 FICEICNKGFQRDQNLQLHRRGH 94
                 89*******************88 PP
2zf-C2H211.20.0012149171123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Lus10041723 149 WKCDKCSKKYAVQSDWKAHSKIC 171
                  58*****************9876 PP
3zf-C2H210.80.0016179197523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr++++ +H   +
  Lus10041723 179 DCGTMFSRRDSFITHRAFC 197
                  9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.82E-77194No hitNo description
PROSITE profilePS5015710.8457294IPR007087Zinc finger, C2H2
PfamPF121716.3E-57294IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0227294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355220114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.82E-7144169No hitNo description
SMARTSM00355150149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MPVDLDNTST ASGEASGSFS GGGCGTNPPS HSQPPPPQSS TPKKKRNLPG MPDPDAEVIA  60
LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKDAVK KRVYVCPEST  120
CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC  180
GTMFSRRDSF ITHRAFCDAL AEESARAHPN RNPTPILDSN RSPDLEPNAH VDSAASPPVP  240
SSTVSPIHSP EFPESRDPAP VMEEPPALVP PSVPVTGAPP VTVNGSCSSS SSSNGSTSST  300
VFASLFASST TAATFQQPPP QTQSFTNLIR AMAVRTEHLA PPPLPSSAYT EPISLCLSTS  360
HGSSIFGVPA PPQPAAMSAT ALLQKAAQMG AAATNASLLR GLGVVSSSSS PHDSWGQRQV  420
MEPENSSVHP GLGLGLFPCD GGSGLKELMM GTPSMFGPKH PTLDFLGLGM AAGGSPSGGL  480
SALITSIGGG LDVGSSFGGG NSAAETSVVG HDVCSEYPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35145206364Zinc finger protein JACKDAW
5b3h_F9e-35145206364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041723
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079066.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-169IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A067K9Z70.0A0A067K9Z7_JATCU; Uncharacterized protein
STRINGLus100417230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]