PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 289aa MW: 30327.5 Da PI: 5.8951 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 159 | 179 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp C k+F+++ H+r+H Lus10041659 159 CPTCRKMFRSWKAVFGHLRMH 179 *******************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MSNSNSSSED NTNSAPSSPP HLSLATTATD AAATSSPNLH ISGEQQQVAQ VSQAAQLTAT 60 VPPPPPLPRA SSSRGGVGIS TISVLAAGGA IRWRPSSSSS ASTAPIPNPL LMVPSTITTA 120 TELLEQAFKH PPPPLPPPQE PNCNRQKGEM DVPSGPPCCP TCRKMFRSWK AVFGHLRMHK 180 ERTYRGAFPP PVSSDGSSSS STVAITSTNT TIRRRGLAID LNVEFNPEDH QEADENIVHV 240 EQEAQALTPP PPAPLRESAS IDLNEPAANK SDEKEGENGS SNNDKAKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041659 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10041659 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 2e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10041659 |