PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041638

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YC

Protein Properties

Length: 275aa MW: 30041.7 Da PI: 5.0366

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041638	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.8	4.2e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl +iv + Lus10041638 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEVTLQRGAKTMSSLHLKHCVQSYNVFDFLREIVSK 69 899**************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.07E-19	1	71	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.4E-18	1	68	IPR009072	Histone-fold
Pfam	PF00808	1.1E-11	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEVTLQR GAKTMSSLHL KHCVQSYNVF 60 DFLREIVSKV PDYSHGHGHS DGSADHRNLH KRKSNIDEGN DSDDEFKRTR THDQSHAGGS 120 GRGRGRGRGR GRGRSARNME RESSHHEGEY EACTTPQGTG STSFPRASVE ERAESKEMVK 180 EHMTITDGAN QAERNFDLNA DVKDGEDAKV AASAAASLAS VPAAVQSSSA VPATETTREE 240 YPGWSLSEVA IDPLQLAQLG RRIDEDEEDY DEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-15	1	55	21	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	132	RGRGRGRGRG
2	123	133	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041638

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610750.1	1e-104	dr1-associated corepressor homolog isoform X1
Refseq	XP_021610751.1	1e-104	dr1-associated corepressor homolog isoform X1
TrEMBL	A0A2C9W2T7	1e-103	A0A2C9W2T7_MANES; Uncharacterized protein
STRING	Lus10041638	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	9e-53	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Lus10041638