PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041600
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 348aa    MW: 37333.2 Da    PI: 9.985
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041600genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31275332359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  Lus10041600 275 DDYSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAVDDPAMLVVTYEGDHNHN 332
                  99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.9E-17223271IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.8E-33261333IPR003657WRKY domain
PROSITE profilePS5081130.722268334IPR003657WRKY domain
SuperFamilySSF1182901.11E-26270332IPR003657WRKY domain
SMARTSM007743.6E-37273333IPR003657WRKY domain
PfamPF031061.8E-26275331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAVELMMNYG GNTNFVSQIE ETAVQEAASG LESVNKLIRL LSQHQTTQDQ HKICNSGPSA  60
SAAVNIETDC RAVADAAVSK FRKVISLLGR TRTGHARFRR APVASSAGAA NLSQQSQNKV  120
GPHQIPESKV YYATPIQQIP PSTQDFGLAV VPIERKDLST ATINFSSYSS AGNTSFVSTL  180
TGETESKQQP SSSSAAFQIA NMSQAATSAS GKRPPLSSSS SMKRKCSSET IGSGKCASGG  240
SSGRCHCSKK SRKMRMKRVV RVPAISMKMA DIPPDDYSWR KYGQKPIKGS PYPRGYYKCS  300
SVRGCPARKH VERAVDDPAM LVVTYEGDHN HNTLCVVETT NLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22261332272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041600
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310122.11e-148probable WRKY transcription factor 7 isoform X1
SwissprotO221763e-90WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLB9HH881e-147B9HH88_POPTR; Uncharacterized protein
STRINGLus100416000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-69WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]