PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041546

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 207aa MW: 23660.3 Da PI: 8.4701

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041546	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.3	5.6e-32	127	185	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ Lus10041546 127 LDDGYRWRKYGQKAVKKNKFPRSYYRCTYQGCNVKKQVQRVNKDEGVVTTTYEGIHTHP 185 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-32	112	185	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-29	119	186	IPR003657	WRKY domain
PROSITE profile	PS50811	29.069	122	187	IPR003657	WRKY domain
SMART	SM00774	3.1E-37	127	186	IPR003657	WRKY domain
Pfam	PF03106	4.1E-26	128	185	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEKFQMLFPF SSTATTSSSS SSTCYSDHCH HLLTSSPTTI NNNTSFNGQV MMRSPSDHHH 60 HRDDKMFHDY VDQTGGSCDH REEQALTMEA VAADHIVDHD GGSSGKVKKV KKQPKYAFQT 120 RSQVDILDDG YRWRKYGQKA VKKNKFPRSY YRCTYQGCNV KKQVQRVNKD EGVVTTTYEG 180 IHTHPIEKPS ENFEHILSQM QIYTPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	117	186	7	76	Probable WRKY transcription factor 4
2lex_A	6e-26	117	186	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041546

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593162	7e-40	KM593162.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY106) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021823097.1	6e-69	probable WRKY transcription factor 45
TrEMBL	M5WY44	3e-67	M5WY44_PRUPE; Uncharacterized protein
STRING	Lus10041546	1e-155	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	4e-55	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Lus10041546