PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10041492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 421aa MW: 46949.1 Da PI: 4.6281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.2 | 7e-32 | 74 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWk 84 lp+G++F+Pt+ e++++ L+k+ g + + ee++++vd i++++P++Lp vk++ ++++fF+++ k+y+tg+rk+r+++ + +W+ Lus10041492 74 LPRGVKFDPTNPEIIWHLLAKNGFGGQkphpfI--EEFVPTVDngdgICYTHPKNLP-GVKQDGNSCHFFHRAIKAYNTGTRKRRKIQgddsgDVRWH 168 799****************99976666565332..344666655667**********.7788999********************85555544778** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tg++k+v+ +g + g+kk++v+y g+++ kt+Wvmh+y+l Lus10041492 169 KTGRTKPVVL-DGVQRGCKKIMVLYMGKSE---KTSWVMHQYHL 208 **********.99************87765...5********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-37 | 59 | 227 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.939 | 74 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-13 | 75 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 421 aa Download sequence Send to blast |
MHDDSRHDSS SSQPLELTVI SNASWLVDGN RIATKIKSAS DPERVKWESN PTKACPNCQH 60 IIDNSDAVQA WPGLPRGVKF DPTNPEIIWH LLAKNGFGGQ KPHPFIEEFV PTVDNGDGIC 120 YTHPKNLPGV KQDGNSCHFF HRAIKAYNTG TRKRRKIQGD DSGDVRWHKT GRTKPVVLDG 180 VQRGCKKIMV LYMGKSEKTS WVMHQYHLGT SEDEKDGEFV VSKIFYQQQQ QQANKGDKVG 240 EELPENIDPI SPMSVTPDPP RIERHSSDFD LEIDSNNVII AADPPVQNTE LECPEDAIQP 300 VCENNQECVA EDTKWWDSES QNLLDSQQMV EGLSLCEEFL RSQSPSRDGN GDPIPDEKSD 360 LSSQYAKLGA ADLKKDLEEC QTLVLDPANI ELDTPPEFRL SQIDFGSQDS FLAWGGGKLE 420 * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10041492 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU830211 | 5e-64 | EU830211.1 Linum usitatissimum clone LU0009E10 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082025.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Refseq | XP_021649926.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Refseq | XP_021649927.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-170 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | R4N7T7 | 0.0 | R4N7T7_JATCU; NAC transcription factor 092 | ||||
STRING | Lus10041492 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-169 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10041492 |