PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041485
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 429aa    MW: 46606.2 Da    PI: 7.3442
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041485genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.54.7e-31277332156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++Wtpe H+rF++a++qLGGs+ AtPk+i+elmkv+gL++++vkSHLQkYRl+
  Lus10041485 277 KQRRCWTPEFHRRFLHALQQLGGSHAATPKQIRELMKVDGLSNDEVKSHLQKYRLH 332
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.38274334IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-28274335IPR009057Homeodomain-like
SuperFamilySSF466893.19E-18275335IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-26277332IPR006447Myb domain, plants
PfamPF002491.6E-5279330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDFPDQRKRC HQYVDALEEE RRKIKVFQRE LPLCFELVTQ AIDACRKELS GTTTEYNMPG  60
QSDCSEHTSS GGPVLEEFIP IKPHDDDDQE NNNSDHHDEE DDDYHFQKER SSLKRTRDDD  120
KADEEDINKE KMNDHKKKSE WLRSVQLWNQ SPDPPSVREV LGDVPRKAAV KEVKRSNGGG  180
GGGAFQPFQK EKSSCVGKSN SANHDKVAVV AKPAAAAPPS AVAMSSNAET AAAATAGVAA  240
GAGTSGGGST SISNNNNSNS NKTKDHHMDK EGQAQRKQRR CWTPEFHRRF LHALQQLGGS  300
HAATPKQIRE LMKVDGLSND EVKSHLQKYR LHTRRPSHAI QNNSHQQGPQ FVVVGGIWVP  360
PPAEYAATAP GGMYAPIAPA IVVTDKKQQT RSSERGGGSS SHSDGGGAHS CSPTTSSSTH  420
TATSPPAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462049.11e-137transcription factor HHO2
TrEMBLA0A2I4KKV81e-136A0A2I4KKV8_POPTR; G2-like family protein
STRINGLus100414850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.11e-47G2-like family protein