PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041449
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 467aa    MW: 51638.1 Da    PI: 5.2136
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041449genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.7e-091962340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  Lus10041449 19 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 62
                 578*****************************667888888876 PP
2CCT58.13.1e-20416453138
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKG 38 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KG
  Lus10041449 416 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKG 453
                  9************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-111764IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0491764IPR000315B-box-type zinc finger
PfamPF006438.3E-81962IPR000315B-box-type zinc finger
CDDcd000213.72E-92064No hitNo description
PROSITE profilePS5101714.059416458IPR010402CCT domain
PfamPF062035.6E-15416453IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MISSKAHGHV ASAVGGKTAR ACDSCIRKRA RWYCAADDAF LCQSCDSSVH SANPLARRHE  60
RVRLKTASLK SLSVDTTNSS NGGSGSVIQP SWVRGVTKKA RTPRPNNNIN KTTSSSSPNS  120
TALMLRVPGV PLVPEVGSDE MYNEEEEEEH QLLFRVPIFD PIELCGNNNN SNDDDAIIHH  180
RHQQQTTSSM DSSCLQGLVL PSDMDFAEFA ADVESLLGRG LENESFGMEE LGILNSCSKL  240
VDDDDEKLVK MEKEDLQDYG GIDLEMEMMA KEEEEAAPFQ LSFEYEEEDE VKKGGRGIII  300
RGEDDSKEEL EDQHDSTTGD GDSSINGDKK RRRNNILLSL NYEAVITAWS TTTHSGSSPW  360
TNGLRPDFDL NECWPDCLGG CGREFMHHQQ HHNHGYEGGF AVGGNSGMGG GGDGGREARV  420
SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGSAACTLR TEKEPD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426442RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906834.11e-133zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2K9RCR71e-143A0A2K9RCR7_MANIN; Constans 16 (Fragment)
STRINGLus100414490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-79B-box type zinc finger protein with CCT domain