PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041413

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB_related

Protein Properties

Length: 1505aa MW: 163879 Da PI: 6.1111

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041413	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.9e-10	998	1037	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +v+av ++G++ ++ I+r++ +R+ +qck ++ Lus10041413 998 WTDEEKTAFVRAVSLYGKD-FAFISRCVR-TRSQEQCKVFFS 1037 ***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.49E-11	773	834	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.329	785	836	IPR017884	SANT domain
SMART	SM00717	5.4E-6	786	834	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.816	993	1044	IPR017884	SANT domain
SMART	SM00717	1.7E-9	994	1042	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.26E-10	997	1047	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-5	998	1038	IPR009057	Homeodomain-like
Pfam	PF00249	4.1E-8	998	1037	IPR001005	SANT/Myb domain
CDD	cd00167	3.05E-7	998	1036	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1505 aa Download sequence Send to blast
MPPEPLPCDR KKHERSESSS SLGSTPRWRD WPAGHYGSYR DFSPRWAGGS SEFRRPSGHG 60 KQGGWHLCAD ESGYGYGPSR SNDKMQEDNN GRPLFSRGDG KYGRSGRDNR GPYGQRDWRA 120 HSWDMSNGSA NGPGRPYDVS NDQRSVDDML TCPPSHPPNS DFVNTWDQLQ LRQQHGNNKD 180 GGNALGSGQR GDKDNSMDWK PLKWTRTGSL PSRGSGYSHS SSSMNLGAVK ANGGKTEMIP 240 KNGTPIRSTS GDVTVARAAS VTLSDETMSR KKPRLKWGEG LAKYEKKSVE GPETSVTGDY 300 TALFTNSLEP VHSRSSSLPD KSPKQMVSPE CVSPATPSSV ACSSSPGVED KVFCPAVSVD 360 NDASNLCGSP SVDSLGREGF SFSLEKMDMG SIPNLGSSLI EMIRSEDLCI VDSCFEKSTG 420 MNKLLVWKGN ALKALETTET EIDILENELK SLKSDSKSKL FGPSQSDSLA ISGDAIACSE 480 QGTLCRDGLR RPVSIMDEAV DGIRNPDDTF DDGYAKDDDI DSPGTATSKF VEPVISVRTP 540 SDMVRCTQHS AVPADESSNS MVGKESALAA CNVNIIRCNN NALLSASKSS VEDGYSNLCT 600 AILASNKESA STVGEEFYRL LPRDPCSVNH SGVVNILSGR TDALVMKKFL TRRCLMKIKE 660 KIVALKFKVL QHLWREDMHL LSVKKFKAKS QKKFESSLRP IHNMHKKHRS SSRVRICSPR 720 SMSLVLSPEM LNFSRKLLAD CSVKVYRDNL KMPMQILDDS ERKVSMFISG NGLVEDPFAV 780 ERERAMINCW SLEERDIFID KLAICGKDFK KISFYLEHKT TADCIEFYYK NHKSDSFGKV 840 KKNKQSKSLT NYLMSSGKKW NREMGTAPLD ILGAASVVAA DPDRKMGSRK VSSSKIFIRG 900 YNKCKLLQGD DGNSERLNNY DVLVNERETA AADVLAGISG SMSSCITTSA DRAEGFYDYN 960 ARRRDTAIRR PSISDVTQNV DEETCSDESC GEMDPADWTD EEKTAFVRAV SLYGKDFAFI 1020 SRCVRTRSQE QCKVFFSKAK KCLGLDQILS GIGMIDPSLS EDANEGESDM EDAIVDGSEI 1080 PSMLDLDPPP RLMCTAGNSK QDVSDGGVGI NLETDLNVSD EKDVAGAIEE ENLMAVENVK 1140 GHLVQSTHLS DGEVINGFGQ MNGQTVQIES GVTEGERDCQ TKKVQHLPLD MGSSSDDSPL 1200 VGNITQRQVE VNSVENSSSM QSNNNLVGAV SVTLNSAAIH CHKALELGEI SGSVQENRSK 1260 QDGSGSVQPS VCCHPVVNHG EYSESGCSEV QTLTEKVTMG DISDAKLLLN AEQFMGNQLV 1320 AEEGGSCLEN SSNSEGQCSV PELPLLSQPG SSTNMEKRSR NGDVKLFGKI LSNPVSSSSS 1380 SQKPVAAHES DEKSTQPQRT LKFNGDHSAD DTSLNLDKNN SAGVEKVPIR SYGFWDGSRI 1440 QTGLTSLPDS ATLLAKYPAA FTNFQVSSSP KLDPVALATT SKNIERSMNG VVSMHQRGGH 1500 KQQQ*

Sequence ? help Back to Top

Protein Sequence Length: 1505 aa Download sequence Send to blast

MPPEPLPCDR KKHERSESSS SLGSTPRWRD WPAGHYGSYR DFSPRWAGGS SEFRRPSGHG  60
KQGGWHLCAD ESGYGYGPSR SNDKMQEDNN GRPLFSRGDG KYGRSGRDNR GPYGQRDWRA  120
HSWDMSNGSA NGPGRPYDVS NDQRSVDDML TCPPSHPPNS DFVNTWDQLQ LRQQHGNNKD  180
GGNALGSGQR GDKDNSMDWK PLKWTRTGSL PSRGSGYSHS SSSMNLGAVK ANGGKTEMIP  240
KNGTPIRSTS GDVTVARAAS VTLSDETMSR KKPRLKWGEG LAKYEKKSVE GPETSVTGDY  300
TALFTNSLEP VHSRSSSLPD KSPKQMVSPE CVSPATPSSV ACSSSPGVED KVFCPAVSVD  360
NDASNLCGSP SVDSLGREGF SFSLEKMDMG SIPNLGSSLI EMIRSEDLCI VDSCFEKSTG  420
MNKLLVWKGN ALKALETTET EIDILENELK SLKSDSKSKL FGPSQSDSLA ISGDAIACSE  480
QGTLCRDGLR RPVSIMDEAV DGIRNPDDTF DDGYAKDDDI DSPGTATSKF VEPVISVRTP  540
SDMVRCTQHS AVPADESSNS MVGKESALAA CNVNIIRCNN NALLSASKSS VEDGYSNLCT  600
AILASNKESA STVGEEFYRL LPRDPCSVNH SGVVNILSGR TDALVMKKFL TRRCLMKIKE  660
KIVALKFKVL QHLWREDMHL LSVKKFKAKS QKKFESSLRP IHNMHKKHRS SSRVRICSPR  720
SMSLVLSPEM LNFSRKLLAD CSVKVYRDNL KMPMQILDDS ERKVSMFISG NGLVEDPFAV  780
ERERAMINCW SLEERDIFID KLAICGKDFK KISFYLEHKT TADCIEFYYK NHKSDSFGKV  840
KKNKQSKSLT NYLMSSGKKW NREMGTAPLD ILGAASVVAA DPDRKMGSRK VSSSKIFIRG  900
YNKCKLLQGD DGNSERLNNY DVLVNERETA AADVLAGISG SMSSCITTSA DRAEGFYDYN  960
ARRRDTAIRR PSISDVTQNV DEETCSDESC GEMDPADWTD EEKTAFVRAV SLYGKDFAFI  1020
SRCVRTRSQE QCKVFFSKAK KCLGLDQILS GIGMIDPSLS EDANEGESDM EDAIVDGSEI  1080
PSMLDLDPPP RLMCTAGNSK QDVSDGGVGI NLETDLNVSD EKDVAGAIEE ENLMAVENVK  1140
GHLVQSTHLS DGEVINGFGQ MNGQTVQIES GVTEGERDCQ TKKVQHLPLD MGSSSDDSPL  1200
VGNITQRQVE VNSVENSSSM QSNNNLVGAV SVTLNSAAIH CHKALELGEI SGSVQENRSK  1260
QDGSGSVQPS VCCHPVVNHG EYSESGCSEV QTLTEKVTMG DISDAKLLLN AEQFMGNQLV  1320
AEEGGSCLEN SSNSEGQCSV PELPLLSQPG SSTNMEKRSR NGDVKLFGKI LSNPVSSSSS  1380
SQKPVAAHES DEKSTQPQRT LKFNGDHSAD DTSLNLDKNN SAGVEKVPIR SYGFWDGSRI  1440
QTGLTSLPDS ATLLAKYPAA FTNFQVSSSP KLDPVALATT SKNIERSMNG VVSMHQRGGH  1500
KQQQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041413

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021658301.1	0.0	uncharacterized protein LOC110648396 isoform X1
TrEMBL	A0A067K1T6	0.0	A0A067K1T6_JATCU; Uncharacterized protein
STRING	Lus10041413	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-148	MYB family protein

Link Out ? help Back to Top
Phytozome	Lus10041413