PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041356
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 967aa    MW: 103969 Da    PI: 9.6646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041356genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0580102123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Lus10041356  80 FVCEICNKGFQRDQNLQLHRRGH 102
                  89******************988 PP
2zf-C2H214.69.7e-05156178123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H++t+
  Lus10041356 156 WKCDKCSKKYAVQSDWKAHQKTC 178
                  58*******************98 PP
3zf-C2H216.23e-05328350123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Lus10041356 328 FVCEICNKGFQRDQNLQLHRRGH 350
                  89******************988 PP
4zf-C2H214.69.7e-05404426123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H++t+
  Lus10041356 404 WKCDKCSKKYAVQSDWKAHQKTC 426
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.97E-879102No hitNo description
PfamPF128740.004480102No hitNo description
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM0035598121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.97E-8151177No hitNo description
SMARTSM0035594156176IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.06E-8327350No hitNo description
Gene3DG3DSA:3.30.160.603.5E-5327350IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0044328350No hitNo description
PROSITE profilePS5015710.949328350IPR007087Zinc finger, C2H2
SMARTSM003550.017328350IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280330350IPR007087Zinc finger, C2H2
SMARTSM0035598369399IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4392425IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.06E-8399425No hitNo description
SMARTSM0035594404424IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MSNLSGEEGS FSSGDEVHHL DKQVLLNHFP AAAPNSAAAA NSDGCGQPPA KKKRNLPGTP  60
DPSAEVMALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTTTEVRKRV  120
YICPEPTCVH HNPARALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHQKTCGT  180
REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQQGLM SNNNNNNQMA DLMSPNSSSA  240
AGDFNSSFDP KNPLKSLPQD LIPMPFKPMN MGAAGGMFST SSGTPAAANS DGCGQPPAKK  300
KRNLPGTPDP SAEVMALSPT TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  360
TTEVRKRVYI CPEPTCVHHN PARALGDLTG IKKHFSRKHG EKKWKCDKCS KKYAVQSDWK  420
AHQKTCGTRE YKCDCGTIFS RVFDQPGSVI EWRSMTIAES LRRDSFITHR AFCDALAEEN  480
NKVNQQGLMS NNNNNNQMAD LMSPNSSSAA GDFNSSFDPK NPLKSLPQDL IPMPFKPMNM  540
GAAGGMFSTS SGTLFGGPRG GGNGGMPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXXXXX XXXXXXXXAE LSVWAPGGGG AGGRRPPTTS SASLQLSSNA GASSGFSAYL  660
QDGKGGNSAA AQMAGSAHMS ATALLQKAAQ MGATASNSIN SPMMHKSFSS SIGGGGASGS  720
PTGFGNSMQK TQQEMSQMFD AAAAGGGVSS PMMNDMGMFA SMFMAGGDDQ DGVGGGFGRG  780
NNGGSGGSNG GMMERSGGGG GGGGSRFGNE AAAAAAAEHV MTRDFMGIGG ARQPGNMQER  840
FEMEAALTLS QQQQQQQQQQ QQRMVGGGMM NHYQQQQPAL LLWGWAGGVG GGALLGLSLS  900
VRVDLEILPV FAGFVLRMAR VGDRLVEAGW RGWEVGCCGV LIFTLTCSIR FASARVLRNI  960
TMHGRW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34152493372Zinc finger protein JACKDAW
5b3h_F3e-34152493372Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041356
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174023.11e-149zinc finger protein GAI-ASSOCIATED FACTOR 1-like
TrEMBLA0A068U7D21e-148A0A068U7D2_COFCA; Uncharacterized protein
STRINGLus100413560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.12e-93C2H2-like zinc finger protein