PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041340
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 486aa    MW: 54342.6 Da    PI: 7.9235
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041340genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31.1e-21129229198
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f k+lt sd +++g ++l +k+a+++      + + + s++l+ +d +g +W++k+i+r+ ++r +lt+GW++Fv++++L +gD +vF   + +++e+
  Lus10041340 129 FTKILTASDIGTHGSFSLHRKHATDClplldlN-QAAPSQELVTKDFHGHEWRFKHIFRGEPRRNLLTRGWNKFVNSKNLVAGDEFVFI--RGDNGEM 223
                  89****************************852.4456679************************************************..3489999 PP

                  EEEEE- CS
           B3  93 vvkvfr 98 
                  +v+v+r
  Lus10041340 224 KVGVRR 229
                  ****98 PP
2Auxin_resp48.53.9e-17255329383
   Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  ha+s+ s+F+++Y+ ra  s F + v k+++a++  + vGm +k + ++e      + G +v v d++p +Wp+S+WrsLk
  Lus10041340 255 HAISELSIFSIYYKTRA--SPFLIGVTKYQEAMNYGFHVGMPIKTNNDGEH---LGYIGKIVEVGDFSP-QWPGSQWRSLK 329
                  8999**********997..99***********************8766665...5689***********.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-34120238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-28124234IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-21129229No hitNo description
PfamPF023621.2E-19129229IPR003340B3 DNA binding domain
SMARTSM010191.0E-17129231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056129231IPR003340B3 DNA binding domain
PfamPF065074.5E-15255329IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MASAMSNTVP SGSSFPNDPK ANDPLTKELW NICAHSTAGV PKEAQLVYYF LQGHMEQLQE  60
TMKLEHDQQI PQFETPCKIL CRVMNVERMI EDDTDEVYAH ITLQATEQIE LTDPVSDPPE  120
KPKPTVHTFT KILTASDIGT HGSFSLHRKH ATDCLPLLDL NQAAPSQELV TKDFHGHEWR  180
FKHIFRGEPR RNLLTRGWNK FVNSKNLVAG DEFVFIRGDN GEMKVGVRRI SRKKPSAPIL  240
SAQSLSLAVV ATGRHAISEL SIFSIYYKTR ASPFLIGVTK YQEAMNYGFH VGMPIKTNND  300
GEHLGYIGKI VEVGDFSPQW PGSQWRSLKV QWYEQSRTER LPDRVSPWEV EPYVAFPYQG  360
VPPTRNKRTR SPPGSGTINK CGFFELVTCW IALSDFYLNQ FNADVASSSG VAEVQNGSEL  420
GGSIRKPSLP HPNTSFTNFR LFGVDLTSSI GNVAGAPATR TRTEVNTEYP LPVQKLLFMP  480
RGSFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1092235616358Auxin response factor 1
4ldy_B1e-1092235616358Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021678843.11e-134auxin response factor 18-like isoform X1
TrEMBLA0A2C9WNV11e-132A0A2C9WNV1_MANES; Auxin response factor
STRINGLus100413400.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.11e-123auxin response factor 18