PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041160
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 198aa    MW: 21820.7 Da    PI: 6.4143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041160genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162547123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  Lus10041160 25 YECSFCKRGFTNAQALGGHMNIH 47
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.55E-72251No hitNo description
Gene3DG3DSA:3.30.160.602.4E-42349IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4892552IPR007087Zinc finger, C2H2
SMARTSM003550.0092547IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDSPNEERND DVQQQRSIPS PRRFYECSFC KRGFTNAQAL GGHMNIHRRD RDPNYSSKPH  60
PPPPPPPTKI PFSNSSRERP PVWVSESSSS SSAAANVYSR PAAGLIWQDS NNPRHHQQYP  120
YVYFQQQVQG SHAMVPPTPE SSQNQGVSSS VTAVSEQQVI WGANLSLQVG PAGSAELANN  180
DHDDGDDVDL ELRLGHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100411601e-143(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-15C2H2 family protein