PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040944
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 330aa    MW: 36084.9 Da    PI: 6.7498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040944genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1858107255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a++ l+g
  Lus10040944  58 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAARAYDRAALILYG 107
                  59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.9E-3758121IPR001471AP2/ERF domain
PROSITE profilePS5103222.60358115IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2158116IPR016177DNA-binding domain
CDDcd000182.39E-2058117No hitNo description
Gene3DG3DSA:3.30.730.109.5E-3058115IPR001471AP2/ERF domain
PfamPF008474.3E-1258105IPR001471AP2/ERF domain
PRINTSPR003671.7E-105970IPR001471AP2/ERF domain
PRINTSPR003671.7E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDVDDNNPPN PNTNTSSPPS SPHYNNSPSL PNSPSSSAAG SKKGKLSGKG GPDNAKFRYR  60
GVRQRSWGKW VAEIREPRKR TRKWLGTFST AEDAARAYDR AALILYGSRA QLNLQPSAAS  120
AAGCSGSNSS SSPQTNNNSS SSSSRSSAQT LRPLLPRPSG FGFTLSRSSN HYNNSNINNP  180
NFLMGDNHNT TISCYPPNAY FIPHHQPIIP HSHHHQFYQN PMLMSQQQHL PNPTATAATT  240
SYEHQVPQQQ QQEQQYGQQE EEGHCQLYED INLLSGSNGN DSQAVEVSGA GQDPGLHADP  300
GGGMWACDEE DYYPNSIWDY GDHNSFFDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1859114359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8873651e-124HQ887365.1 Linum usitatissimum clone GMU2AYZ01AUNIW microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061FK925e-55A0A061FK92_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGLus100409440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.17e-28ERF family protein