PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040790
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 760aa    MW: 85220.8 Da    PI: 5.9854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040790genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.17.4e-1143847561373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL +cA+avss+d + a++l+ ++++++sp gd  qRla++f++AL+arla++++++y al++ +ts    ++ l+a++++  ++P+ k++ + a
  Lus10040790 384 LRTLLATCAQAVSSDDRRTANELMRQIRQHSSPFGDGSQRLAHCFANALEARLAGNGTQIYTALSADKTS---AADMLKAYQAYITACPFNKVAIIFA 478
                  5789************************************************************999999...9************************ PP

         GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  Nq I+ a+  +  ++vHiiDf++ +G+QWpa+++ L++R++gpp+lR+Tg++ p+sg    e++++tg+rLak++e+ +vpfe+n+ +ak++e++el+
  Lus10040790 479 NQSIMHAATDAnaSTVHIIDFGVLYGFQWPAFIHRLSKRSGGPPKLRMTGIELPQSGfrPGERVQATGRRLAKYCERHNVPFEYNA-IAKKWENIELD 575
                  ******998877799*****************************************9*****************************.7********** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  eL+++++E laVn+ ++ ++llde+v ++s+rd+vL+l++ ++P ++v++  + ++n++ F++rf e++ ++s+lfd+l+a+++re++ r+k E+e+ 
  Lus10040790 576 ELKINKNEFLAVNCLFRGKNLLDETVLVSSPRDAVLRLIRMINPGIFVHAIVNGSYNAPFFMTRFRESFFHFSSLFDMLDANMGREDQMRMKFEKEFY 673
                  ************************************************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  gre+ nv aceg+er+er et+++W+ r ++aG+k++pl+  ++k  k+ +r  + + + v+e+ ++l++gWk+r +++ SaW
  Lus10040790 674 GREAINVMACEGSERVERPETYKQWQVRSTRAGMKQLPLDPVMMKRLKCKVRGKYHEDFVVNEDGEWLLQGWKGRVIYASSAW 756
                  *******************************************************899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.633358737IPR005202Transcription factor GRAS
PfamPF035142.6E-111384756IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MDSEFIGSSG STNRFAFDDQ PLFPDLSRYT NSSAANGFRF NTSSSSPMDF GGNFMMDNSL  60
TLTDLDASNF TQSSPEGDST TDDNEFGDTV LKYINQMLME EDMEQKPCMF HDPLAVQAAE  120
KSLYDVIGEK YPPPSSPAYS SSYGDQFLVD SPGNESSYSV GSDFGGSSSS TGNSACSIDV  180
HWNSELGDSK VKFMKMPLPT DFVFRSPPLS RQKIERASNS NGNGNDVVSS YVGNFGMPNF  240
FSGSELELQF KKGVEEANKF LPKVSPLVID LENKNFTPKL EVAVKAEKEE ENYLPYLKVK  300
KNHDREDDDF KEERSNKQSA VYVDESELSE MFDKLLVCNG GKEGENPSCI HNYESPENVA  360
KCSQQNRKAR AKRQGSKKGE VVDLRTLLAT CAQAVSSDDR RTANELMRQI RQHSSPFGDG  420
SQRLAHCFAN ALEARLAGNG TQIYTALSAD KTSAADMLKA YQAYITACPF NKVAIIFANQ  480
SIMHAATDAN ASTVHIIDFG VLYGFQWPAF IHRLSKRSGG PPKLRMTGIE LPQSGFRPGE  540
RVQATGRRLA KYCERHNVPF EYNAIAKKWE NIELDELKIN KNEFLAVNCL FRGKNLLDET  600
VLVSSPRDAV LRLIRMINPG IFVHAIVNGS YNAPFFMTRF RESFFHFSSL FDMLDANMGR  660
EDQMRMKFEK EFYGREAINV MACEGSERVE RPETYKQWQV RSTRAGMKQL PLDPVMMKRL  720
KCKVRGKYHE DFVVNEDGEW LLQGWKGRVI YASSAWIPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5139175825379Protein SCARECROW
5b3h_D5e-5139175825379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021647651.10.0scarecrow-like protein 14 isoform X3
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2C9WLQ00.0A0A2C9WLQ0_MANES; Uncharacterized protein
STRINGLus100407900.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]