PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040789
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 588aa    MW: 66348.5 Da    PI: 6.822
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040789genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.61.5e-1012145852374
         GRAS   2 velLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   +lL++cA+ v sgd +  a + L++++  +sp+gd++qR+a+yf+++L++rla+     + a ++s     + +++l a++l++ ++P+ k+++  a
  Lus10040789 214 LTLLTQCAQTVGSGDRRsTAIEQLSQIRRFSSPSGDANQRIAHYFANGLESRLAG-----VPARSCS----ASAADVLRAYQLYVSICPFRKMTNRFA 302
                  579**********99876899**********************************.....3333333....45799********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I +   +++++H+iDf+i++G+QWp++++ L++ p+gpp+lR+Tg++ p++g   +e++eetg+rL+++A el+++fe++  +a r+ed+++e+L
  Lus10040789 303 NRTIAKLCRKAKALHVIDFGIGYGFQWPCFFHYLSNLPDGPPKLRLTGIDLPQPGfrPAERVEETGRRLKRLAGELNIQFEYRS-IAMRWEDIKYEHL 399
                  ******************************************************9*****************************.799********** PP

         GRAS 195 rvkp....gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                   +++    +E +aVn+++++++l+d++ s++    +rd++++l++s++Pkv+++   +  +n++ F++rf ea+++y+a+fd++ea+ ++e++ r++ 
  Lus10040789 400 GINNsdgdEEFVAVNCIYRMKNLPDDTISSSPetsARDAMVDLIRSVNPKVFIHGVVNGAYNGPFFATRFKEAVYHYAAFFDMMEANCGKEDHSRAVF 497
                  ****99999****************99887655669************************************************************** PP

         GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  Ere++g+e++nvvaceg+er er et+++W  r  ++GF++v+l+ +++ ++k +   +++d + ++e+ ++l+lgWk+r + +vSaW+
  Lus10040789 498 EREIVGKELENVVACEGEERHERPETYKRWGGRNVRSGFRSVKLQREVVVKVKEVKGDYHED-FVMDEDGDWLLLGWKGRIIHAVSAWK 585
                  ************************************************************66.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.136187566IPR005202Transcription factor GRAS
PfamPF035145.2E-99214585IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MDGLAVSTPP SSSSSGTDSE PPGGNQSPTS GSDKEYSSSF TSNTPDYFSS VLKYINDILM  60
EEEQLGGDQH CMVQYNSLAL QAAERSFYHV LVHPNHEPTN SDLVPSFPIQ LQPSLAHFNK  120
HLPGVNGKSR GRKHLDYESS DEYYTRRSEQ ASVVHADESA ELETIDSWFL HKASNDEYMP  180
CPLFDESRNK ASKKLRVETR LRRRANITEP VDLLTLLTQC AQTVGSGDRR STAIEQLSQI  240
RRFSSPSGDA NQRIAHYFAN GLESRLAGVP ARSCSASAAD VLRAYQLYVS ICPFRKMTNR  300
FANRTIAKLC RKAKALHVID FGIGYGFQWP CFFHYLSNLP DGPPKLRLTG IDLPQPGFRP  360
AERVEETGRR LKRLAGELNI QFEYRSIAMR WEDIKYEHLG INNSDGDEEF VAVNCIYRMK  420
NLPDDTISSS PETSARDAMV DLIRSVNPKV FIHGVVNGAY NGPFFATRFK EAVYHYAAFF  480
DMMEANCGKE DHSRAVFERE IVGKELENVV ACEGEERHER PETYKRWGGR NVRSGFRSVK  540
LQREVVVKVK EVKGDYHEDF VMDEDGDWLL LGWKGRIIHA VSAWKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4521958624379Protein SCARECROW
5b3h_D1e-4521958624379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040789
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067040.10.0scarecrow-like protein 9
TrEMBLA0A067L1H50.0A0A067L1H5_JATCU; GRAS04 protein
STRINGLus100407890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-141GRAS family protein