PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040789 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 588aa MW: 66348.5 Da PI: 6.822 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 331.6 | 1.5e-101 | 214 | 585 | 2 | 374 |
GRAS 2 velLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL++cA+ v sgd + a + L++++ +sp+gd++qR+a+yf+++L++rla+ + a ++s + +++l a++l++ ++P+ k+++ a Lus10040789 214 LTLLTQCAQTVGSGDRRsTAIEQLSQIRRFSSPSGDANQRIAHYFANGLESRLAG-----VPARSCS----ASAADVLRAYQLYVSICPFRKMTNRFA 302 579**********99876899**********************************.....3333333....45799********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I + +++++H+iDf+i++G+QWp++++ L++ p+gpp+lR+Tg++ p++g +e++eetg+rL+++A el+++fe++ +a r+ed+++e+L Lus10040789 303 NRTIAKLCRKAKALHVIDFGIGYGFQWPCFFHYLSNLPDGPPKLRLTGIDLPQPGfrPAERVEETGRRLKRLAGELNIQFEYRS-IAMRWEDIKYEHL 399 ******************************************************9*****************************.799********** PP GRAS 195 rvkp....gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +++ +E +aVn+++++++l+d++ s++ +rd++++l++s++Pkv+++ + +n++ F++rf ea+++y+a+fd++ea+ ++e++ r++ Lus10040789 400 GINNsdgdEEFVAVNCIYRMKNLPDDTISSSPetsARDAMVDLIRSVNPKVFIHGVVNGAYNGPFFATRFKEAVYHYAAFFDMMEANCGKEDHSRAVF 497 ****99999****************99887655669************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Ere++g+e++nvvaceg+er er et+++W r ++GF++v+l+ +++ ++k + +++d + ++e+ ++l+lgWk+r + +vSaW+ Lus10040789 498 EREIVGKELENVVACEGEERHERPETYKRWGGRNVRSGFRSVKLQREVVVKVKEVKGDYHED-FVMDEDGDWLLLGWKGRIIHAVSAWK 585 ************************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.136 | 187 | 566 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.2E-99 | 214 | 585 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MDGLAVSTPP SSSSSGTDSE PPGGNQSPTS GSDKEYSSSF TSNTPDYFSS VLKYINDILM 60 EEEQLGGDQH CMVQYNSLAL QAAERSFYHV LVHPNHEPTN SDLVPSFPIQ LQPSLAHFNK 120 HLPGVNGKSR GRKHLDYESS DEYYTRRSEQ ASVVHADESA ELETIDSWFL HKASNDEYMP 180 CPLFDESRNK ASKKLRVETR LRRRANITEP VDLLTLLTQC AQTVGSGDRR STAIEQLSQI 240 RRFSSPSGDA NQRIAHYFAN GLESRLAGVP ARSCSASAAD VLRAYQLYVS ICPFRKMTNR 300 FANRTIAKLC RKAKALHVID FGIGYGFQWP CFFHYLSNLP DGPPKLRLTG IDLPQPGFRP 360 AERVEETGRR LKRLAGELNI QFEYRSIAMR WEDIKYEHLG INNSDGDEEF VAVNCIYRMK 420 NLPDDTISSS PETSARDAMV DLIRSVNPKV FIHGVVNGAY NGPFFATRFK EAVYHYAAFF 480 DMMEANCGKE DHSRAVFERE IVGKELENVV ACEGEERHER PETYKRWGGR NVRSGFRSVK 540 LQREVVVKVK EVKGDYHEDF VMDEDGDWLL LGWKGRIIHA VSAWKPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-45 | 219 | 586 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-45 | 219 | 586 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040789 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067040.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A067L1H5 | 0.0 | A0A067L1H5_JATCU; GRAS04 protein | ||||
STRING | Lus10040789 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46600.1 | 1e-141 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10040789 |