PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040734

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 704aa MW: 75930.2 Da PI: 6.2075

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040734	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	403.6	1.9e-123	309	672	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 +lLl+cAeavs+++l +a+++L ++sel++p g++ qR+aayf eA++ar++ s+ +l+ + + +++++ s++ ++a+++f+ +sP++kfsh+ta Lus10040734 309 LTLLLQCAEAVSANNLGEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARVLTSCLGLAPQNsNILQNNNYYSTRIASAFQVFNGISPFVKFSHFTA 406 579****************************************************999888455555555599999**************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+gs s ++l++tg+rL++fA++lg+pfef + va+++ +l+ e+L+v Lus10040734 407 NQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGS----SLHSLQSTGKRLSDFAHKLGLPFEFIP-VADKVGNLNWERLNV 499 ***********************************************....9**********************.7********** PP GRAS 197 kp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 + Ea+aV++ h+l+d ++s ++ +L+++k+l Pkvv+vveq+++h+++sFl rf+ea++yysalfdsl a++++eseer++vE++ll+re Lus10040734 500 TNkMEAVAVHWLQ--HSLYDVTGSHAN----TLSILKRLAPKVVTVVEQDLSHDTGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSRE 591 9989****9..999999999999....*************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+nv+a++++ + + ++Wr +le++GFk v+l +aa+qa lll +++ dgy++ e++g+l lgWkd L+++SaW+ Lus10040734 592 IRNVLATSTSTGISTGTGTSSWRGKLEKSGFKGVSLAGNAATQATLLLGMFPCDGYTLVEDKGTLKLGWKDLCLLTASAWK 672 ******************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.374	282	652	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.6E-121	309	672	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MAETPNESSS GAGNGVVLVR RKMEKKRIAS EMLQPTATAN DQNQNQRRPY YRRTAISNST 60 VVLPGVDQQQ DMNLEELVNY STTTTISSAT MLSSSPSSSV NVLTAPPNGN DSNNSNLVCG 120 FSGLPLFPPY QKKTSGSRER EDHIPPQANQ TVAVASASAS SSSPVIITSQ MAEEEAEASG 180 SSSSSWINGI LRDLINSASS ASSASTVSIP QLIQNVRDII YPCNPNLASL LEHKLRSLVN 240 PTTNTISKVQ ISPNILPLPY SGSPASASEE ERIIRCSSDT TAAQAQAQVE KQNEDGVEKK 300 RDEDGLHLLT LLLQCAEAVS ANNLGEANKM LLEISELSTP FGTSAQRVAA YFSEAMSARV 360 LTSCLGLAPQ NSNILQNNNY YSTRIASAFQ VFNGISPFVK FSHFTANQAI QEAFEREDRV 420 HIIDLDIMQG LQWPGLFHIL ASRPGGPPYV RLTGLGSSLH SLQSTGKRLS DFAHKLGLPF 480 EFIPVADKVG NLNWERLNVT NKMEAVAVHW LQHSLYDVTG SHANTLSILK RLAPKVVTVV 540 EQDLSHDTGS FLGRFVEAIH YYSALFDSLG ASYGEESEER HVVEQQLLSR EIRNVLATST 600 STGISTGTGT SSWRGKLEKS GFKGVSLAGN AATQATLLLG MFPCDGYTLV EDKGTLKLGW 660 KDLCLLTASA WKPPTTTMTE VDAPPGSTGL QQYHPHPLMP TTS*

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MAETPNESSS GAGNGVVLVR RKMEKKRIAS EMLQPTATAN DQNQNQRRPY YRRTAISNST  60
VVLPGVDQQQ DMNLEELVNY STTTTISSAT MLSSSPSSSV NVLTAPPNGN DSNNSNLVCG  120
FSGLPLFPPY QKKTSGSRER EDHIPPQANQ TVAVASASAS SSSPVIITSQ MAEEEAEASG  180
SSSSSWINGI LRDLINSASS ASSASTVSIP QLIQNVRDII YPCNPNLASL LEHKLRSLVN  240
PTTNTISKVQ ISPNILPLPY SGSPASASEE ERIIRCSSDT TAAQAQAQVE KQNEDGVEKK  300
RDEDGLHLLT LLLQCAEAVS ANNLGEANKM LLEISELSTP FGTSAQRVAA YFSEAMSARV  360
LTSCLGLAPQ NSNILQNNNY YSTRIASAFQ VFNGISPFVK FSHFTANQAI QEAFEREDRV  420
HIIDLDIMQG LQWPGLFHIL ASRPGGPPYV RLTGLGSSLH SLQSTGKRLS DFAHKLGLPF  480
EFIPVADKVG NLNWERLNVT NKMEAVAVHW LQHSLYDVTG SHANTLSILK RLAPKVVTVV  540
EQDLSHDTGS FLGRFVEAIH YYSALFDSLG ASYGEESEER HVVEQQLLSR EIRNVLATST  600
STGISTGTGT SSWRGKLEKS GFKGVSLAGN AATQATLLLG MFPCDGYTLV EDKGTLKLGW  660
KDLCLLTASA WKPPTTTMTE VDAPPGSTGL QQYHPHPLMP TTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	292	673	3	380	Protein SCARECROW
5b3h_A	0.0	293	673	3	379	Protein SCARECROW
5b3h_D	0.0	293	673	3	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040734

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019462155.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A1J7GLX6	0.0	A0A1J7GLX6_LUPAN; Uncharacterized protein
STRING	Lus10040734	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2068	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10040734