PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040585
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 364aa    MW: 39347.3 Da    PI: 9.0934
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040585genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-11427226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k+e+Cr+f+r G C+yG+rC++ H+
  Lus10040585  4 KREPCRNFQR-GSCQYGERCRYLHV 27
                 89********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-6228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.793229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-8426IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MPVKREPCRN FQRGSCQYGE RCRYLHVVQQ QPKQSNPFGF GSGQQQQQKQ QQSSNPFGFG  60
AKQQQFKPFE NKWSRSNPSD NGAGHAPSSS KHQPDSKSQA ANHTCTDPES CKRSIAEDFE  120
HEKPIWKLTC YGHARNGPCD VVGDISYEEL RAAAYEDAKR GINVQSIIER ERNLSNSKLV  180
EFQNLLQTLY VARSGSAVGM HGATTNGISP TSSSSAPLQV SSFNQLGPSL NTGFGARPPS  240
QVNNLFGQPS VFPNSTQNAG VFGTNNVASA NVPFGGQLDS QHHRSSFPNV AGFPTNSAVS  300
CGGSNLLSSS QSFTTQNPIS SNLNAEASSS LAVNSVEKEK ASGDRSIWSK ETWKPGEVKR  360
LVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040585
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689229.11e-120zinc finger CCCH domain-containing protein 16 isoform X1
RefseqXP_021689230.11e-120zinc finger CCCH domain-containing protein 16 isoform X2
SwissprotQ9FWS32e-69C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A0D2V0761e-114A0A0D2V076_GOSRA; Uncharacterized protein
STRINGLus100405670.0(Linum usitatissimum)
STRINGLus100405850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.14e-61C3H family protein