PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040583
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 383aa    MW: 42735 Da    PI: 6.8909
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040583genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.32.3e-30173227155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rWt+eLH+ F+eav+ LGG+++AtPk+il +m+v+gL ++hvkSHLQkYRl
  Lus10040583 173 KQRIRWTTELHDLFLEAVTTLGGPDVATPKRILSIMNVEGLNIYHVKSHLQKYRL 227
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.58E-17170229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28170229IPR009057Homeodomain-like
PROSITE profilePS5129412.508170230IPR017930Myb domain
TIGRFAMsTIGR015575.9E-25173228IPR006447Myb domain, plants
PfamPF002491.5E-7177226IPR001005SANT/Myb domain
PfamPF143791.9E-15270315IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVLYNKATNP PNGSSFHFQG SLLSTPPHCT IFCTGFHSTS GISAFIPPLQ RPIISDHHQV  60
NNYNNNSADM PSLVLDDHSM KNLDDLLHMT EENSNFHPLM HPHAAKDVVS MTLKETMGYL  120
SKELDIPLDD VVDNNDKPAA GLEEIFEQPT AGNKDDYMSG SSHQNSEGVT SHKQRIRWTT  180
ELHDLFLEAV TTLGGPDVAT PKRILSIMNV EGLNIYHVKS HLQKYRLQTQ VSSVLHLVPN  240
CSEKRIPSAV EKKSASSNND SQGNMNRNMV VTTALQMQID VQKLLHDQLK AQKLLQLRIE  300
QNGEFLKKLL EEQQKLTPRS RLNSPSSSSQ LELSHYADVS SPSPQNSTPL LLTTHNNSSQ  360
LLSNHQTDST NSKCHKRLRD DR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-20173226255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-20173226255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-20173226255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-20173226255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-20173226255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-20173226255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-20173226255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-20173226255Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100405830.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1703558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-38G2-like family protein