PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040450
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 87aa    MW: 9384.6 Da    PI: 7.5417
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040450genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.91e-071154343
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43
                     +WT+ E +l+ +a +++ ++   +W  +a+ +g g++++++k+ 
      Lus10040450 11 SWTARENKLFEEALALHDKDtpdRWINVANAVGGGKSAEEVKLQ 54
                     7*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.301763IPR017884SANT domain
SMARTSM007179.8E-6861IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-101067IPR009057Homeodomain-like
CDDcd001674.53E-51155No hitNo description
PfamPF002491.8E-61155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSNNGVAST SWTARENKLF EEALALHDKD TPDRWINVAN AVGGGKSAEE VKLQFDILVA  60
DVERIESGRV PIPKYKAAAP KLASRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-24184182RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306110.27e-31protein RADIALIS-like 4 isoform X1
SwissprotQ1A1736e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A482DHU16e-32A0A482DHU1_9ASPA; RADIALIS 1 (Fragment)
STRINGLus100404501e-56(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-29RAD-like 6