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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lus10040427 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 296aa MW: 32993.6 Da PI: 9.9565 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10040427 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 337.7 | 3e-103 | 1 | 295 | 1 | 301 |
GAGA_bind 1 mdddgsrernkg.yyepaaslkenlglqlmssiaerdaki....rernlalsekka...avaerd.........maflqrdkalaernkalverdnkl 81
mddd+ + rn+g yyep+ ++ +l+lql s +++rd+k r++n + + +a +++rd +++ +rd+++++r nk+
Lus10040427 1 MDDDALNMRNWGgYYEPS--FRGHLSLQLTSNMTDRDTKHflpgRNQNNIMLDVNAgggGFHPRDfmlseshvpINY-MRDSWINQR------DSNKY 89
9***9999****9***99..************************88877666655411267****999999999999.99*****93......34566 PP
GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpiee.aaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
+ll +p++++v ++t+ ++slq p l++s + ++ + ++ee ++++e++ +kkrq + + k++kakk++k + k+ +++
Lus10040427 90 PNLLA-------PNPNYTHVFPETSGAHSLQV--LPALDPSMGG-GSRDDGKMCKVEEqVFDKEQEHQPTKKRQGGGVMKAPKAKKPRK-P-KDPNSN 175
66555.......458999**********9999..4555555555.33333334444440445566666677778888888998888888.3.232333 PP
GAGA_bind 179 kkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
+ + k +kks+++v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeG
Lus10040427 176 PVQ---RAPKPPKKSMEMVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEG 270
333...45699*************************************************************************************** PP
GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
y++snp+DL++hWAkHGtnkfvtir
Lus10040427 271 YNFSNPIDLRTHWAKHGTNKFVTIR 295
************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MDDDALNMRN WGGYYEPSFR GHLSLQLTSN MTDRDTKHFL PGRNQNNIML DVNAGGGGFH 60
PRDFMLSESH VPINYMRDSW INQRDSNKYP NLLAPNPNYT HVFPETSGAH SLQVLPALDP 120
SMGGGSRDDG KMCKVEEQVF DKEQEHQPTK KRQGGGVMKA PKAKKPRKPK DPNSNPVQRA 180
PKPPKKSMEM VINGIDMDIS GIPIPVCSCT GTPQQCYRWG CGGWQSACCT TNVSMYPLPM 240
STKRRGARIA GRKMSQGAFK KVLEKLAAEG YNFSNPIDLR THWAKHGTNK FVTIR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
