PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ARF | ||||||||
Protein Properties | Length: 621aa MW: 68693.5 Da PI: 7.5685 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.5e-24 | 107 | 208 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ Lus10040403 107 FAKQLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGQTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGD 200 89****************************985444444..8999*********************************************3..47888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Lus10040403 201 LCVGIRRA 208 8****997 PP | |||||||
2 | Auxin_resp | 104.7 | 1.1e-34 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++ +FevvY+P+a+t+e+ v+++ v++a+++++ +GmRfkm fetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+ Lus10040403 255 AATLAAKGRPFEVVYYPSAGTPEYWVRASAVRAAMQMQWYPGMRFKMPFETEDSSRISCfMGTISSVQVADPIHWPNSPWRLLQ 338 688999*****************************************************9**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-38 | 98 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.76E-30 | 102 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.48E-22 | 106 | 207 | No hit | No description |
SMART | SM01019 | 2.9E-21 | 107 | 209 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.338 | 107 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-22 | 107 | 208 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-29 | 255 | 338 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MKCLDSQFWH ACAGGMVQIP PVSSKVYYFP QGHAEHAQLT ADFAPPSCQI PSMVPCKVSA 60 INYMADPETD EVFAKISLIP LISGSRDDNS SDDGLFESSQ EEKTASFAKQ LTQSDANNGG 120 GFSVPRYCAE TIFPRLDYNA EPPVQTILAK DVHGQTWKFR HIYRGTPRRH LLTTGWSNFV 180 NQKKLVAGDS IVFLRADNGD LCVGIRRARR SEFAPSGWNS YGFMREDYEC RKNVVSNGGD 240 VTMKAKIRSE SVVEAATLAA KGRPFEVVYY PSAGTPEYWV RASAVRAAMQ MQWYPGMRFK 300 MPFETEDSSR ISCFMGTISS VQVADPIHWP NSPWRLLQVE WDEPELLHNV KRVNPWLVEL 360 VSSMPAIHIP PFSPPRKKLR FPQEPDFSLM SQLPLPPFTG NSLRSNNSLL CCVPNTNIPA 420 GIQGARHTHH FDLLPSSDLH FNKLQQQTGQ LLPFGFAPKF TIPTNNVAAK TNCDENVSCL 480 LTIGSSSPKE SSETKKTPHI FLFGQLIVPD HHTSSGSCSG ESSNGNSTSV GNAEKIMITN 540 LSEGSSSSVY QNGPLENSSD AGSPRYKHLT ITNDAGRKLD LSMMGSYKEL NGKLADMLGM 600 ERSRHTGDES FGYRFTNRHS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-80 | 4 | 359 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040403 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021651479.1 | 0.0 | auxin response factor 18-like | ||||
Refseq | XP_021651480.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A251KJ90 | 0.0 | A0A251KJ90_MANES; Auxin response factor | ||||
STRING | Lus10040403 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Lus10040403 |
Publications ? help Back to Top | |||
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