PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040366
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 581aa    MW: 63955.4 Da    PI: 6.796
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040366genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.62.1e-54364457194
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  vreqdrflPian+srimkk lPan+ki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yre +
  Lus10040366 364 VREQDRFLPIANISRIMKKGLPANGKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKAYLARYREGD 457
                  59*****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.470.103.9E-41463No hitNo description
SuperFamilySSF567526.28E-2416303IPR001544Aminotransferase class IV
Gene3DG3DSA:3.20.10.101.7E-23164339No hitNo description
PfamPF010634.0E-9199303IPR001544Aminotransferase class IV
Gene3DG3DSA:1.10.20.101.9E-51361466IPR009072Histone-fold
SuperFamilySSF471131.55E-38367471IPR009072Histone-fold
PfamPF008084.0E-27370434IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.8E-20398416No hitNo description
PROSITE patternPS006850401417IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.8E-20417435No hitNo description
PRINTSPR006156.8E-20436454No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003824Molecular Functioncatalytic activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MTECRFLFSN GVISSSADVP PVTTLLQSHS GAYTTTRTHG DGACILLWER HLRRLSSSAR  60
ILLSEKPQLL FKSGLGRSSP WIEPTALGSA VESLVNDAVS QVLPIALRDG RRKDGEELAI  120
TALVSGNDTK NVDGRRSVVE MLDVYVHLGG YVPPVFGASG TAARLAVVGG RRSLAEAKYS  180
DWVRLRKPLE RLRSPLTTEL LLSNDGDHLL EGFVTNFFVV CCKGSSSFQE DNGVVENAYP  240
FEVQTAPVAD GVLPGVIRQL VIEVCLSKGI AVQEVSPSWS KREFWQEAFV TSSLRIVQHV  300
EKIQLPRSWE SLEQKSLEEI SWDEKQFKTN PGMITSIIQM ADNPGSPAGG SHDSGGEHSP  360
HSGVREQDRF LPIANISRIM KKGLPANGKI AKEAKDTVQE CVSEFISFIT SEASDKCQKE  420
KRKTINGDDL LWAMATLGFE DYIEPLKAYL ARYREGDAKG SARGGEGSSA KRDPMGGNGM  480
PAQNTQWHNN KLHMFYYLWF SSKTYVALLS QLTSHILELA LEPELELARR HTESNIPWLK  540
LGSFKIEPSH KRAFPESNTE PNASGVVHQQ LYMSGTVESQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-41365455393NF-YB
4awl_B2e-41365455494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-41365455494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8308450.0EU830845.1 Linum usitatissimum clone LU0032C11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021654295.11e-146uncharacterized protein LOC110645436 isoform X1
RefseqXP_021654296.11e-146uncharacterized protein LOC110645436 isoform X1
TrEMBLA0A1Q3BRC30.0A0A1Q3BRC3_CEPFO; CBFD_NFYB_HMF domain-containing protein/Aminotran_4 domain-containing protein (Fragment)
STRINGLus100403660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF670633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.78e-68nuclear factor Y, subunit B1