PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10040312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 21105.1 Da PI: 9.8623 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Lus10040312 45 FECKTCNRQFSSFQALGGHRASH 67 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00088 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F+ L H+r+H Lus10040312 99 HRCSVCGLEFPVGQALGGHMRRH 121 79********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.59E-9 | 43 | 67 | No hit | No description |
Pfam | PF13912 | 1.3E-11 | 44 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.556 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.59E-9 | 94 | 121 | No hit | No description |
Pfam | PF13912 | 1.3E-10 | 98 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.683 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.092 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MMNMQETTGE ILNLTVANCL MMLSQQPQYD IVVSERRSSS PSRVFECKTC NRQFSSFQAL 60 GGHRASHKKH PLPTGSPGGS LEVGGHRKKQ VLPTKPKAHR CSVCGLEFPV GQALGGHMRR 120 HRAAPGLTVV ATATTFVSAG GDSSGGSEQS SESLTLQMKK ARVSSLDLNL TPYENDVKLL 180 KLGTNYNASM VDFFH* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10040312 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027131.1 | 7e-48 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2H5NYR7 | 2e-46 | A0A2H5NYR7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TCK3 | 2e-46 | V4TCK3_9ROSI; Uncharacterized protein | ||||
STRING | Lus10040312 | 1e-144 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28710.1 | 7e-28 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10040312 |