PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040284

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 765aa MW: 85769.4 Da PI: 6.7763

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040284	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373.1	3.6e-114	390	761	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+av+++d ++a+ lL++++++a p+gd mqRla+ f+ +L+ar+a+s++++ykal +++ts +++l+a++lf ++P+ k+s+ Lus10040284 390 LRTLLTLCAQAVAADDRRNANDLLKQIRDNAPPTGDGMQRLASIFADGLEARMAGSGTKIYKALITKATS---AADVLKAYQLFLAACPFKKLSNYFS 484 5789************************************************************9999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I++ +++++++Hi+Df+i +G+QWp+L+q L+s p+gpp+lRiTgv+ p++g +e++eetg rLa++A++++vpfefn+ +a++++++++e+L Lus10040284 485 NKTIMNLAQRAKKLHIVDFGILYGFQWPCLIQRLSSMPGGPPKLRITGVDLPNPGfrPAERVEETGCRLANYARTFNVPFEFNA-IAQKWDTIKIEDL 581 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+l+Vn++++l +llde+v ++ +r+ vL+lv++++P+v+++ + +++++ F +rf eal ++s++fd+le+++pr+ er+ +Er ++g+ Lus10040284 582 KIEKDEVLVVNCMYRLRNLLDETVVVDCPRNIVLNLVRRMNPEVFILGIVNGSYSAPFFITRFREALFHFSTVFDMLETTVPRDMPERMLIERDIFGW 679 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+acegaer er et+++ + r ++aGF+++pl+ ++ ++ak +++ +++ ++++e+ +++++gWk+r ++++S+W+ Lus10040284 680 EAMNVIACEGAERLERPETYKQCQIRAQRAGFSQLPLNREIFSTAKEKVKENYNKDFMIDEDGEWFLQGWKGRIVYALSSWK 761 *************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.035	364	741	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-111	390	761	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MRSETEQLFH VLPVTFNPLS FSKYFPPPPP STPPSPGGLF DSVNGLKLSH EAVSALTTRK 60 LISGLKSGDT LVNKNLLPHN DPLPPIHPSI NQAVQSSRDD FDFNDVVLKY IDDMLMEENM 120 EEKTCMFQES SAALQAAEKS LYELIGERYP PLSVTEPIPH PDQYRDSLDD QHDSNRRACS 180 SNSSCISSGS SLIDSGRSYD VDECRSSTRN ASYSVSLTAQ SSDSPVSNII IPDMFTESNS 240 ADQFRRGFEE ASKFIPRASL LFDMESTRIS LKDLKEQNKE GEIKVVNKLE NNYCFEQPRG 300 KKNPHPEYLN LEGAARSSKQ SAVSSESTVS SEDFDRILLN CAQDPEATLR AAMESEKNRT 360 AVQNKLTKSS NGGKARGKRQ GGTKKNVVDL RTLLTLCAQA VAADDRRNAN DLLKQIRDNA 420 PPTGDGMQRL ASIFADGLEA RMAGSGTKIY KALITKATSA ADVLKAYQLF LAACPFKKLS 480 NYFSNKTIMN LAQRAKKLHI VDFGILYGFQ WPCLIQRLSS MPGGPPKLRI TGVDLPNPGF 540 RPAERVEETG CRLANYARTF NVPFEFNAIA QKWDTIKIED LKIEKDEVLV VNCMYRLRNL 600 LDETVVVDCP RNIVLNLVRR MNPEVFILGI VNGSYSAPFF ITRFREALFH FSTVFDMLET 660 TVPRDMPERM LIERDIFGWE AMNVIACEGA ERLERPETYK QCQIRAQRAG FSQLPLNREI 720 FSTAKEKVKE NYNKDFMIDE DGEWFLQGWK GRIVYALSSW KASA*

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MRSETEQLFH VLPVTFNPLS FSKYFPPPPP STPPSPGGLF DSVNGLKLSH EAVSALTTRK  60
LISGLKSGDT LVNKNLLPHN DPLPPIHPSI NQAVQSSRDD FDFNDVVLKY IDDMLMEENM  120
EEKTCMFQES SAALQAAEKS LYELIGERYP PLSVTEPIPH PDQYRDSLDD QHDSNRRACS  180
SNSSCISSGS SLIDSGRSYD VDECRSSTRN ASYSVSLTAQ SSDSPVSNII IPDMFTESNS  240
ADQFRRGFEE ASKFIPRASL LFDMESTRIS LKDLKEQNKE GEIKVVNKLE NNYCFEQPRG  300
KKNPHPEYLN LEGAARSSKQ SAVSSESTVS SEDFDRILLN CAQDPEATLR AAMESEKNRT  360
AVQNKLTKSS NGGKARGKRQ GGTKKNVVDL RTLLTLCAQA VAADDRRNAN DLLKQIRDNA  420
PPTGDGMQRL ASIFADGLEA RMAGSGTKIY KALITKATSA ADVLKAYQLF LAACPFKKLS  480
NYFSNKTIMN LAQRAKKLHI VDFGILYGFQ WPCLIQRLSS MPGGPPKLRI TGVDLPNPGF  540
RPAERVEETG CRLANYARTF NVPFEFNAIA QKWDTIKIED LKIEKDEVLV VNCMYRLRNL  600
LDETVVVDCP RNIVLNLVRR MNPEVFILGI VNGSYSAPFF ITRFREALFH FSTVFDMLET  660
TVPRDMPERM LIERDIFGWE AMNVIACEGA ERLERPETYK QCQIRAQRAG FSQLPLNREI  720
FSTAKEKVKE NYNKDFMIDE DGEWFLQGWK GRIVYALSSW KASA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-49	390	761	5	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040284

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021653736.1	0.0	scarecrow-like protein 9
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2K1ZCG1	0.0	A0A2K1ZCG1_POPTR; Uncharacterized protein
STRING	Lus10040284	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Lus10040284

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]