PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040256
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 393aa    MW: 43581.9 Da    PI: 7.7223
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040256genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.71.3e-102532901954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e++ LA+++gL+ +qV++WF N R +
  Lus10040256 253 FEHflHPYPTDSEKQILAQQTGLSRTQVSNWFINARVR 290
                  564459******************************88 PP
2BELL75.21e-24137205472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+++k + L+ +l+eV+krY+ y+eq++ v++sFeavaglg+a+p++  A k +S+hF  Lk+a+ ++i
  Lus10040256 137 EHRRKNSNLMLMLHEVYKRYRLYCEQMKSVVASFEAVAGLGNAAPFIPNAIKIVSFHFTPLKNALLHHI 205
                  899*************************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-2279203IPR006563POX domain
PfamPF075262.2E-2585201IPR006563POX domain
SMARTSM003891.7E-10233298IPR001356Homeobox domain
CDDcd000861.19E-13234295No hitNo description
SuperFamilySSF466892.27E-18236300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-28238298IPR009057Homeodomain-like
PfamPF059201.9E-18251290IPR008422Homeobox KN domain
PROSITE profilePS5007112.179253294IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGDNPSEASF FNSSSSNQPK TKPNPFPNHH HSFPITSPAI IVNNSSHCNK SPLQQQQQGG  60
LSLSLSFAAP VVLPLGPFTG YATILNTSKF LRPAQLILDD LFGFVNSHPP SHHHHTPADH  120
GDEEEASMFG TQLEGFEHRR KNSNLMLMLH EVYKRYRLYC EQMKSVVASF EAVAGLGNAA  180
PFIPNAIKIV SFHFTPLKNA LLHHIHCFKD QSDSAHSQSP SSITTFNLKQ HPVWRSHKML  240
PDHAVALLKS WLFEHFLHPY PTDSEKQILA QQTGLSRTQV SNWFINARVR LWKPMVEEIH  300
SLESEQKADV ASSSSLASIA NKRTRFSSEQ EEDHRGYSSS DGVSLALALP PRIHVPINNP  360
SWPFPVNAAA NPSVGNHELA GGSSINQFYG HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16239298463Homeobox protein Meis2
3k2a_B6e-16239298463Homeobox protein Meis2
4xrm_A6e-16236298163Homeobox protein Meis2
4xrm_B6e-16236298163Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524245.22e-99BEL1-like homeodomain protein 9
TrEMBLB9SE262e-98B9SE26_RICCO; Bel1 homeotic protein, putative
STRINGLus100402560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.14e-60BEL1-like homeodomain 8