PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040111
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 290aa    MW: 32334.1 Da    PI: 9.5385
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040111genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.9e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +++++G+g Wk+I +         +R+  ++k++w++
      Lus10040111  5 KQKWTAEEEEALRAGIAKHGTGKWKLIQQDPEfnpylSTRSNIDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.788161IPR017930Myb domain
SuperFamilySSF466892.66E-16259IPR009057Homeodomain-like
SMARTSM007171.8E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-14557IPR009057Homeodomain-like
PfamPF002497.6E-10555IPR001005SANT/Myb domain
CDDcd116607.03E-20657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGI AKHGTGKWKL IQQDPEFNPY LSTRSNIDLK DKWRNIIVTP  60
GEKSRTPKTK VPTADDVVAT PQPISQVLDA PPAPIVSPSV PAPVPTPPVL LPVTTDEVAK  120
IAPVDQRHEL PQNGRKQVTS RLRVLVNRDK LEKVQNSYRF KESTPSVVAK APSPKKQVQT  180
KGLQRSDSAT PIETLEEVAR AAASIIAEAE TKAVRAAEKV HELEIASILR EETESILLFS  240
QQIYDRCKSE SICSSYHTTY SNFCVFCVRP KVPKSCIFLM WQVCKERRY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040111
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8871287e-44HQ887128.1 Linum usitatissimum clone GMU2AYZ01AG523 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021650170.11e-61telomere repeat-binding factor 4-like
TrEMBLA0A2P2L4C78e-63A0A2P2L4C7_RHIMU; Uncharacterized protein
STRINGLus100401110.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.25e-33MYB_related family protein