PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10040081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 240aa MW: 25828.7 Da PI: 7.6951 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.3 | 1e-12 | 33 | 57 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL +P GA+sV+Ca+C++V Lus10040081 33 CSGCRNLLLFPVGATSVCCAVCNAV 57 ************************9 PP | |||||||
2 | zf-LSD1 | 45.5 | 1.2e-14 | 72 | 96 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ Lus10040081 72 CGGCHTLLMYIRGATSVQCSCCHTI 96 ***********************97 PP | |||||||
3 | zf-LSD1 | 41.1 | 2.9e-13 | 110 | 134 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Lus10040081 110 CGNCRMLLMYEYGARSVKCAVCNFV 134 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.1E-11 | 30 | 60 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-9 | 33 | 57 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.3E-14 | 69 | 98 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.0E-12 | 72 | 96 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.6E-12 | 107 | 137 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 110 | 134 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MPVPLAPYPT PPAPYTPPPP PPAANGGQSQ LVCSGCRNLL LFPVGATSVC CAVCNAVTAV 60 PPPGTEMAQL VCGGCHTLLM YIRGATSVQC SCCHTINLAL EANQVAHVNC GNCRMLLMYE 120 YGARSVKCAV CNFVTSVGML DKNKCFNFLQ VTSQLTHMVW PRRDISEAGS LPFGKEERNF 180 EENKLQEKVS ENVGGDSVPK GRTRADATPA VQFHRRPTSS PDRPDRLEEM QWISGWSGC* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10040081 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593714.1 | 2e-85 | protein LOL1 | ||||
Refseq | XP_021593716.1 | 2e-85 | protein LOL1 | ||||
Refseq | XP_021593717.1 | 2e-85 | protein LOL1 | ||||
Refseq | XP_021593718.1 | 2e-85 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 3e-75 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2C9UHS8 | 4e-84 | A0A2C9UHS8_MANES; Uncharacterized protein | ||||
STRING | Lus10040081 | 1e-178 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32540.3 | 9e-62 | lsd one like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10040081 |
Publications ? help Back to Top | |||
---|---|---|---|
|