PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10039873

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 317aa MW: 35161.1 Da PI: 8.3206

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10039873	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.7	2.9e-33	72	215	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tk... 79 lp+G++F+Ptd+el+ e+L+ kv+++ +++ +i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ t+ Lus10039873 72 LPAGVKFDPTDQELL-EHLEGKVKSDAgmlhplIDE--FIPTIDgengICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhsddtTEggg 165 799**********.99***99888654333..3444444445******.555666688**************867777633444 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Lus10039873 166 ETRWHKTGKTRAVQI-GGKTKGYKKILVLYtnYGKQKKPEKTSWVMHQYHL 215 667********.99********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-37	64	234	IPR003441	NAC domain
PROSITE profile	PS51005	32.65	72	234	IPR003441	NAC domain
Pfam	PF02365	7.6E-16	73	215	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MTWCNDCTDV QTIETSSPPP PPPLPSPNPN STTHHHQHHA ANHRHGFTKS CPSCGHQIKC 60 QNQARLHDLP GLPAGVKFDP TDQELLEHLE GKVKSDAGML HPLIDEFIPT IDGENGICYT 120 HPEKLPGVSK DGLVRHFFHR PSKAYTTGTR KRRKVHSDDT TEGGGETRWH KTGKTRAVQI 180 GGKTKGYKKI LVLYTNYGKQ KKPEKTSWVM HQYHLGSSED EKDGELVVSK VFYQTQPRQC 240 KATSTSSFLM MTHHHHDEYY GSNANIGFTT STYSGGDHQS SRSLSGVAGV SSQQSSQHLM 300 NPHFTVHDGS PNYDIP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10039873

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444706.1	1e-140	NAC domain-containing protein 73
Refseq	XP_024444707.1	1e-140	NAC domain-containing protein 73
Swissprot	O49459	1e-122	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	B9MYC7	1e-138	B9MYC7_POPTR; NAC family protein
STRING	Lus10039873	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-122	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Lus10039873

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]