PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039870
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 1745aa    MW: 195410 Da    PI: 5.2195
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039870genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.8e-184196257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 +kR   t++qle+Le+ ++ + yps++ r eL+++lgL++rq ++WF+ rR k++k
  Lus10039870 41 SKRKMKTASQLEVLERTYAAEAYPSEALRIELSAQLGLSDRQLQMWFCHRRLKDRK 96
                 58999*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-172296IPR009057Homeodomain-like
SuperFamilySSF466892.05E-152896IPR009057Homeodomain-like
PROSITE profilePS5007116.3743797IPR001356Homeobox domain
SMARTSM003894.2E-1739101IPR001356Homeobox domain
PfamPF000461.6E-154296IPR001356Homeobox domain
CDDcd000862.50E-134297No hitNo description
PROSITE profilePS5082716.873586645IPR018501DDT domain
SMARTSM005713.5E-22586645IPR018501DDT domain
PfamPF027917.0E-17587642IPR018501DDT domain
PfamPF050662.7E-12766833IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156127.4E-99771016IPR028942WHIM1 domain
PfamPF156132.9E-1111601231IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1745 aa     Download sequence    Send to blast
MEDSGGVATT PAGGGGGGGG SSSSPAVGTE KKSAEGDNKS SKRKMKTASQ LEVLERTYAA  60
EAYPSEALRI ELSAQLGLSD RQLQMWFCHR RLKDRKSAQG KSQRKDSPPP AAAALPATVL  120
PGEEMVAVSE AYREHLPASA SASTSRSSPF GHVMDPRRLV ARAAGVAVPR ISGDPLTVKR  180
YYEQQHSIQE LRAIAFVEAQ LGEPLRDDGP ILGMEFDSLP PDAFGALIGS AATLGHQKAS  240
GRHFESNLYE RSDAKATKGP TRALHEYQFL PQQPSVRADG YERTAPLYSY GSPSDSHSTK  300
NVPLTAGRPF MHGNEQPSSG YGFPGHVPSL SLMPQEVRQG HHLLLSSGEF DTASQRNTFA  360
NMEMDAQLGP HAITALENPF TSSDRRVDHT EDVLRMERKR KSEEARLARE VDAHEKRIRK  420
ELERQDILRR KREEQIRKDL ERQERERRKE EERVMREKQR EEERYQREQR REMERREKFL  480
QKESLKAERM RQKEEMRREK EVARQKAATE RAHARRIAKE SVELIEDEKL ELMELAASSK  540
GLPSLLALDL ESLQNLDLFR DELSTFPPKS VPLRRPFAVQ PWSNSEENIG NLLMVWRFII  600
TFTDVLGLWP FTFDEFVQAF HDYDPRLLGE IHVALLKSII KDIEDVARTP ASGLGTNQNS  660
SGNPGGGHPR IVEGAYAWGF DIRNWQRHLN PLTWPEILRQ FGLSAGFGPR LKRRKVEQFR  720
DDNEGNDGKD VISNLRNGVA AKNAVAIMRE RGFANPRRSR HRLTPGTVKY AAFHILSLEG  780
SNGLSIFDVA EKIQKSELRD LSTSKTPEAS IAAALSRDTK LFERTAPSTY CVRTPYRKDP  840
FDAEAILSAA REKIQIFKSG LVEEDADEAE RDEDSESDVA EDPEVDDLDG DLNSNKESYC  900
SPELGKFGVQ SSVENGKDEK NDVKKEQVCA EKVDGSSSVC LESSNQSKGS AAAVDHTVSA  960
KAVSSIVENT DIDESNPGEL WVQGLTEGEY SDLSVEERLN ALVALVGVAN EGNSIRLVLE  1020
ERLDAANALK KQMWAEAQLD KRRTKEDYFL KQCSQFAGHK MDPNLLTPVT EGRQSPLITF  1080
DEKIKTTPLS AIVSQEQPRD PENDVNLHKN FPSEGNTQIQ DLPVGADNLP YNHLGHVSER  1140
SRSQLKSFVN HKAEETYVYR SLPLGLDRRR NRYWQFVTCP SRNDLGCGRI FVELHDGRWR  1200
LIDSEEGFDS LLACLDVRGV RESHLHFVLR RIEKSFKETV RGTLLQAKTE NGVTNGDDSP  1260
RSAVCPTDSD ASETSTSFSI ELGRNRSERN SSLKRYCDFE RWMWKECSST TLLCATKYGQ  1320
KRCTQLLGIC ADCHDIYFSE EDSWCPCNRA PDPTKAIDDL PQNVNNYSPV RIRVLKLLLA  1380
LIEVLLPPEA LEPFWTSALR KSWSKKLSSM SSAEEKLQAL TLLEAALRKD YLSSNFETTS  1440
ELLGMSDPPG FDAATVSSSM DMVPLLPWLP RTTAAVALRV MEFDASIAYI LQQKVKLEED  1500
KIAGDFSAVA NSSYSIQTSG TFDKGGAYQE DSWVDVGNGS GGFSNGRAYR GGRGRKQLAH  1560
SGPQSQRKVT GPRSDSRKRN TVSSGLAWKG RPRVRGGRKR GRPSAGSRQK SAAKTTVTVI  1620
APQREILKET VFEKPRDEWN EEEARFPVEV DENASSSERS DYNAEIGKLG DFQPLSDDDM  1680
EVNEDDQDEY REEEEEEEMD EYEDEERNLE VDGYINAESD EEMDEMQDED RDLDGTASSS  1740
DFSD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636582.10.0homeobox-DDT domain protein RLT2 isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A2C9URI80.0A0A2C9URI8_MANES; Uncharacterized protein
STRINGLus100398700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator