PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039736
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 215aa    MW: 23284.3 Da    PI: 4.5908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039736genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.1e-111454147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+ eEd++l  +++    + W++Ia++m  gRt++++k++w+ +
      Lus10039736 14 KGAWSREEDDKLRAYIA----R-WSAIASKMS-GRTDNEIKNYWHAH 54
                     79**************8....6.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.96E-12760IPR009057Homeodomain-like
PROSITE profilePS5129417.916959IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-17959IPR009057Homeodomain-like
SMARTSM007177.6E-91357IPR001005SANT/Myb domain
PfamPF002495.4E-91454IPR001005SANT/Myb domain
CDDcd001672.81E-101655No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVRGAFYDKN GVKKGAWSRE EDDKLRAYIA RWSAIASKMS GRTDNEIKNY WHAHLKKRVT  60
TKQRMPAGES QSSNKSSLPT SSCSSDLQNS ASQSQVQTSQ VKETLILESS QSSPPETSSY  120
ASGGESSAAA VGRWENCTID GDSNSGGCCH YDDGGDFWTE PFVVESSISN GGGGNGSSCA  180
GDLPFWWMGG EYMTWPDEFL LDNDEVDGLM YGLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039736
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100397361e-158(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.14e-14myb domain protein 58