PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039650
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 698aa    MW: 78468.2 Da    PI: 6.7958
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039650genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.9e-11299355155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+ ++ a++k++g
  Lus10039650 299 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARSYDLAALKYWG 355
                  78*******************87776664446655.77******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-13299365IPR016177DNA-binding domain
PfamPF008472.1E-8299355IPR001471AP2/ERF domain
CDDcd000183.64E-18299363No hitNo description
Gene3DG3DSA:3.30.730.101.8E-11300364IPR001471AP2/ERF domain
SMARTSM003807.0E-21300369IPR001471AP2/ERF domain
PROSITE profilePS5103217.042300363IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MKSMNNNDEN NNNNNININN NNWLGFSLTP DHHHHHFRMA DVIPTTTSTT TSAAASMPSS  60
FYNLTSSYAT NSSSPSSYYV HPQNGGASFF CSQMLPLKSD GSLCIMQALT TSHPSHDFFG  120
AHHHHHYESN ERESMALSLD NNTSNNDMMY HIHHQHQLQQ QFYHASSFNH NEAAANKEFQ  180
QIEGDDDDAA IVKSWISRNY GMVEQQSNNN NANENESAAG GCGSMNAAMV AYGDLQSLSL  240
SMSPGSQSSC VSSVSQISTP PAECGVMVVD NKKRGCEKVD QKKQIVHRKS IDTFGQRTSQ  300
YRGVTRHRWT GRYEAHLWDN SCKKEGQSRK GRQGGYDMEE KAARSYDLAA LKYWGASTHI  360
NFPLENYHKV IYHNELDEMK NMSRQEYVAH LRRQELPLPN IISVVHLRIF ISKLEXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXTVLS SSHHNEPSDW KMVLYHHQYQ NQSSDHYNQQ ECLIATDNII SVAHNQEVEE  600
PGGKIQVSNA SSLVTSLNSS REASPHPSAA AANSLPMLFG MVPSSSSSSS SAKLLFGDHS  660
SNSANTSSSW VPSPAGQLRT AAIPLPHMPV FAAWTDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629464.11e-110AP2-like ethylene-responsive transcription factor ANT isoform X2
TrEMBLA0A2C9UVR41e-109A0A2C9UVR4_MANES; Uncharacterized protein
STRINGLus100396500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.19e-59AP2 family protein