PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10039613

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 305aa MW: 33674.4 Da PI: 8.263

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10039613	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.1	3.7e-06	149	168	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+ksF+r nL+ H+ Lus10039613 149 FSCHLCSKSFNRYNNLQMHM 168 89*****************9 PP
2	zf-C2H2	15.9	3.7e-05	233	255	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Lus10039613 233 FMCRKCGKPFAVKGDWRTHEKNC 255 89*****************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.34E-5	144	171	No hit	No description
PROSITE profile	PS50157	10.762	149	176	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.42	149	171	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.5E-4	149	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	151	171	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.85E-6	218	253	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.7E-5	229	253	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	72	233	253	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	160	259	282	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MADPSASATS AASVGWFNFF PLTTNTSTIS TSQHYYSPLS SIDLNGPPPS TPLLIDYFSH 60 DKQKEPHYHH HNSNSTISLR IGPPPPSCVS SSTSSSSSSS SSANKTSSGS NNINPEEAAS 120 ANFSSLLGNK SEQYWIPTPT EILFGPSQFS CHLCSKSFNR YNNLQMHMWG HGSQYRKGPD 180 SLKGSQPTAM LRLPCYCCAA GCKHNIDHPR AKALKDFRTL QTHYKRKHGI KPFMCRKCGK 240 PFAVKGDWRT HEKNCGCIWY CICGSDFKHK RSLKDHVKSF GHSSRDQEDD DDEDEVDGDP 300 TVNT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10039613

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011045.1	1e-110	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-99	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A067LGZ5	1e-109	A0A067LGZ5_JATCU; Uncharacterized protein
STRING	Lus10039613	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	2e-97	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10039613

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]