PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039295
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 335aa    MW: 36405.4 Da    PI: 10.0264
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039295genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30181240260
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++i Y g+H+h+k
  Lus10039295 181 NDVWAWRKYGQKPIKGSPYPRNYYRCSSTkGCGARKQVERSTTDPNMFIISYAGDHTHPK 240
                  8**************************998****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-31167241IPR003657WRKY domain
PROSITE profilePS5081132.512175241IPR003657WRKY domain
SuperFamilySSF1182902.22E-26175241IPR003657WRKY domain
SMARTSM007742.6E-36180240IPR003657WRKY domain
PfamPF031066.8E-26181239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAEDDWDLTA IVRSCTTSPA APNEESDPHN PLTGLTFEAE PDPFAFPDLS HTGFHELLQD  60
SYDNKPFSSG QRNLIIPPPP LTPKSSDFAG QSQRRTAVSP RVVVVRNNQQ QTAQDLGNRY  120
QRQMQGCSSS GYMGSGSSNL AFSFSSSLRS MQSQPATVRP RKKKNNQKRL VVQVTADNLS  180
NDVWAWRKYG QKPIKGSPYP RNYYRCSSTK GCGARKQVER STTDPNMFII SYAGDHTHPK  240
PTHRNSLAGS TRTKFPLKIE PGGDVSSTSA PPPTLQTITT SHGKKPAACS SPAAGSSPTT  300
PLSATMDHEA AVNSRTIGND FSFSRQTSHS PSFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20171242880Disease resistance protein RRS1
5w3x_D1e-20171242880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039295
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615285.19e-68probable WRKY transcription factor 27
STRINGLus100392950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-51WRKY DNA-binding protein 27