PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039153
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 424aa    MW: 48280.1 Da    PI: 7.0025
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039153genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.6e-5381371129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeel+++yLkkkv  +k+++ evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + 
  Lus10039153   8 VPPGFRFHPTDEELLHYYLKKKVMFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN- 103
                  69****************************.99**************963433332556*************************************9. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  + +++g++ktLvfy+grap+g+ktdW+mheyrle
  Lus10039153 104 SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                  8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-597162IPR003441NAC domain
PROSITE profilePS5100558.278162IPR003441NAC domain
PfamPF023659.8E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASSNGGVPP GFRFHPTDEE LLHYYLKKKV MFQKFDMEVI REVDLNKMEP WELQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDSD TNDQDHSNSN EDGWVVCRVF KKKNLFKING GGSNNHTNTN  180
NTMNHHHHHH ALGSSSSLNS LSMLPTTTNS DHIQQHRQQQ LLTMNAMGPT TSSTMDDNNN  240
NNDHDPENNY DHTQLVVQQP TRYHQYLMQP TAASYNHPCN LELNNNNSKQ LEVDSLSLHH  300
YSAAVPPLFQ MAARTDHQLA EWPTDEAAAA TTMQMFDPRM VAATTSSPPP PHLGSGTNNI  360
NVGGGCDGDN HHECSSSKER AADISSSNRF DHHVDGHQQD NNDQSIHNLS LRGHEMDFWG  420
YQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5121649170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039153
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026452600.11e-121protein BEARSKIN2-like
TrEMBLA0A059BXQ41e-118A0A059BXQ4_EUCGR; Uncharacterized protein
STRINGLus100391530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-108NAC domain containing protein 70