PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038856
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 568aa    MW: 64214.8 Da    PI: 7.4062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038856genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000887798223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 kC +C++ F ++ n++rH r+H
  Lus10038856 77 KCDKCSREFCSSINYRRHVRVH 98
                 7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.30576103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-577111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MPVVKQKAGN TTDVMKSEEG NGSLDTFIRQ AMGKEPLLSF PRTNDNPVQW IQLLQALDQQ  60
DGPGWPLLTP LKVQMQKCDK CSREFCSSIN YRRHVRVHHR LKKLDKALPV MSLLLNESIL  120
KDVLLGQGTT KNRNLLGAFW EKLSEDDAKE IFSFKDVALE EVSGSSIIKS LMTLNRKQGL  180
CPLPQYCLRA GTTLLDLIQG RFLYPLSSED LFSILDDASE KTFLCGAAIS MQKYIFEGEA  240
AKNGLETKNI VACTSFLVEQ KLVKAWLADK DAEALRCQKL LVEEEEAAQR RQAELLERKR  300
LKKLRQKEQR AKEHQQEEKT DTLEEPAELP CSTACSSNSH DMEIPADPFS SSSEPIQLAD  360
IEDGDFDLEG QIGYSNGGGA GRIYYPAMGN YRRGRWPQRL QWNSHTPNGF LRKWSRKSRV  420
VEYGWETSKP RIEKLVISQQ PEDDNAKRRE VLIGSISVAL RSEDSNDREV QRKNSRDTVK  480
QWRPVSRNGT KGQAQEDEIA PRESSPDENL HPKRFQFSCQ AAKAFLAERW KEAMAAEHVK  540
LVLALNPGKY AQRSGNVEET LVDESSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296303ERKRLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038856
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9504394e-56KU950439.1 Linum usitatissimum clone 212N17_SAD1_M5791_96, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090229.10.0uncharacterized protein LOC105648450 isoform X1
TrEMBLA0A172MLE70.0A0A172MLE7_LINUS; Uncharacterized protein
STRINGLus100388560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-114C2H2-like zinc finger protein