PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 425aa MW: 45367.8 Da PI: 6.6972 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 171 | 193 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Lus10038674 171 YECKTCSRTFPSFQALGGHRASH 193 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12 | 0.00064 | 289 | 311 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F++ L H+r+H Lus10038674 289 HECAICGAEFNSGQALGGHMRRH 311 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.87E-8 | 170 | 193 | No hit | No description |
Pfam | PF13912 | 6.4E-13 | 170 | 195 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 171 | 193 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.367 | 171 | 198 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 173 | 193 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.87E-8 | 284 | 311 | No hit | No description |
Pfam | PF13912 | 2.3E-12 | 288 | 313 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 289 | 316 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.061 | 289 | 311 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 291 | 311 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
METKEVSTVG APTVEPVIRA TAEEVEEVKA DTVMHINKEE EVLPPPLPSP NDGITVLNPV 60 PITQIIKGKR TKRQRVRSPV ASDFSSIGDD VDDDYVYEDD EEIIDDDSRS SSVQLQPPTK 120 EEENMANCLI LLAQGVNETG EIGAGGPPGA ARHCSGGGGG GGGGKAGYYV YECKTCSRTF 180 PSFQALGGHR ASHKKPRNIN NNNSSSSMLS MMIGGGEHIN KTLNNNNHHI NDSIRDMNSC 240 LNLQLNSGGG RVNGGGFTSF YNNINRTSSM FNNNKGTMNN NNNSSSKVHE CAICGAEFNS 300 GQALGGHMRR HRAPAASAAP PSPAAAGFSL LNNNTNRNAQ SFVNGNGYHN HNNGNNNRDG 360 GYGGSSSNNN NNNTNGKRRS MSLELDLNLP APEEKQQQQQ IPPPSPQKKP SLVFQSPALV 420 DCHY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 255 | GGRVNGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038674 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10038674 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 3e-31 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10038674 |