PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038670
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 1265aa    MW: 141365 Da    PI: 6.6389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038670genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-518709971128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+evdiyk ePwdL   +++k++++ewyfFs  dkky +g r nrat +gyWkatgkd+e+ + +
  Lus10038670 870 LAPGFRFHPTDEELVIYYLKRKVGNKPVRF-NAIAEVDIYKNEPWDLAdkSRLKSRDQEWYFFSALDKKYGNGARMNRATGKGYWKATGKDREIRR-D 965
                  579************************999.89**************75348899999*************************************9.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++l  +kktLvf++grap g++t+Wvmheyrl
  Lus10038670 966 NQLLAMKKTLVFHSGRAPGGQRTNWVMHEYRL 997
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF538223.23E-4828402IPR028082Periplasmic binding protein-like I
CDDcd063661.15E-8831388No hitNo description
PfamPF010944.8E-4748379IPR001828Receptor, ligand binding region
Gene3DG3DSA:3.40.50.23009.4E-1149143No hitNo description
Gene3DG3DSA:3.40.50.23001.1E-16147294No hitNo description
Gene3DG3DSA:3.40.50.23009.4E-11295363No hitNo description
SuperFamilySSF538501.74E-25398535No hitNo description
Gene3DG3DSA:3.40.190.101.1E-13419514No hitNo description
CDDcd136861.61E-68419748No hitNo description
SMARTSM000796.0E-6421750IPR001320Ionotropic glutamate receptor
PfamPF004971.5E-8443744IPR001638Solute-binding protein family 3/N-terminal domain of MltF
Gene3DG3DSA:1.10.287.703.1E-18523648No hitNo description
PfamPF000601.1E-18531789IPR001320Ionotropic glutamate receptor
SuperFamilySSF538501.74E-25638744No hitNo description
Gene3DG3DSA:3.40.190.101.9E-4649708No hitNo description
Gene3DG3DSA:3.40.190.101.1E-13709745No hitNo description
SuperFamilySSF1019413.53E-588691022IPR003441NAC domain
PROSITE profilePS5100557.4788701021IPR003441NAC domain
PfamPF023655.7E-26872997IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004970Molecular Functionionotropic glutamate receptor activity
Sequence ? help Back to Top
Protein Sequence    Length: 1265 aa     Download sequence    Send to blast
MVDHLHLVLA AIATTFLLLL ATITSTDAAT RIGAIVDETC RIGKEQTLAM QMALQDFHDS  60
TNTSLVFHLH IKNSSGEPLQ AALSAQELVM NSQVNAIVGP SSWEETSLVA EIGSKNQIPI  120
LCLSDSTPRW ARERWPFLVQ FSSSKPSQMK AIASIIHSFG WHQVSVICED LESSTKAVLQ  180
LSDALRQANG EIIDVVTLPP FSTSSSLLFN ELETLRIRPC RVFVVHISSS TLAARLFEKA  240
KDMKMMERDY VWIATDALTS LVHSFDPSTI SAMQGVLGVK GHYPQTSQSL QSFYKRFRTR  300
FSLVHPDEHS HEHGIFAAEA YDAIWTLGLS LLGDSNSKGR QNLLNKLLAS NFNGLLGKVQ  360
FTMQMANPVN TFEIVNVIGK SYATFFSSMR DITMGQQVVW PGRPWYIPRG WAPSPIDEPL  420
RIGVPTESIF KQFVNVEFDP SRNTVGSVKG YAIELFEKAV EQLPFYLPYK FIPFNGTYTA  480
LVQQIYLKNV EAVVGDIGIV TSRLPIATCY DSPAAIEESQ QSLLITKPFT MSLWLLILVL  540
NMYNGFVVWM IERDKSLEPK GSLLNEVGVM MSLSFTTLFS LQGSKLTSNL SRMTMVVWLF  600
MALVITQTYT ANLSSILTVQ ELEAVIDSVE SIQRSHADIG YLHVTYVARY LEEVLHFNPK  660
KVKNYTSPEA SMTDLQNGVI AAVFMERPWA KILLARYCTG FTIAKQSFKV GGFGFAFAKG  720
SPWLPYMTEA LVKVTESGQL RDLERDMITS QKCVGKKLLG SNSGDSSSSS NSDSIGADSF  780
WMLFVFTAGT STLALVIFLF YCTDNDVNAL PFPWVCFLVS ILFYGLAAVP SKRTNQPNCL  840
QLKVPFLSHQ SSILPLSLPP SPPXXXGGVL APGFRFHPTD EELVIYYLKR KVGNKPVRFN  900
AIAEVDIYKN EPWDLADKSR LKSRDQEWYF FSALDKKYGN GARMNRATGK GYWKATGKDR  960
EIRRDNQLLA MKKTLVFHSG RAPGGQRTNW VMHEYRLVDE ELERIGTLQG DSYVLCRVFH  1020
KNNIGPPNGN RYAPFLEEEW DDSRAVLVPG EDVADEVVAC NETNHMEQDK YCITKETFDV  1080
NEVPILTRDL LSLCKNESVE MEGDAPMCVL NTEAPFPLIQ YKRRKHGHDY DSNGSEKSRT  1140
TQDLCSSTTT TATTTTNTTD TMMTTTAATN TAISALLEFS LMEPKERTPP SPKETAFQPA  1200
SLESLVSSGC MKLINDLQRE VHKVSVERET LKMEVMSAQA MIYILQTRID ALNKENGDLK  1260
RSLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47870102315170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021652536.10.0glutamate receptor 2.8-like
TrEMBLA0A2N9HDV70.0A0A2N9HDV7_FAGSY; Glutamate receptor
STRINGLus100386700.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-138NAC domain containing protein 50