PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038463 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 111aa MW: 12775 Da PI: 10.7501 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 70.9 | 1.9e-22 | 44 | 110 | 8 | 70 |
S1FA 8 akGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrk....kkPvskkklkreklkqGvavPGe 70 + G++v+ +v glll+f+vgny+ly ya ++ k kk vskkk+kre+lkqG+ vPG+ Lus10038463 44 SNSSRQGMVVFGIVVGLLLLFVVGNYLLYSYATRQSKNNKkmmiKKAVSKKKMKRERLKQGIFVPGD 110 555667**************************98777666345579*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 2.2E-20 | 48 | 110 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MDLDEFVSWT PEKPKRTYFI RNGHMGRDKN GKMIIRENED DVQSNSSRQG MVVFGIVVGL 60 LLLFVVGNYL LYSYATRQSK NNKKMMIKKA VSKKKMKRER LKQGIFVPGD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038463 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10038463 | 1e-75 | (Linum usitatissimum) |
Link Out ? help Back to Top | |
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Phytozome | Lus10038463 |