PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10038426

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 295aa MW: 32434.4 Da PI: 8.1855

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10038426	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.7	3.8e-31	64	122	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Lus10038426 64 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 122 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-31	58	124	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	58	124	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	61	124	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	63	123	IPR003657	WRKY domain
Pfam	PF03106	5.0E-26	65	122	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MINNNNSRNN NNYNSASCLA GPVQQISSPR NLGIKRRKSQ AKKVVCIPAP ATVNSRPSGE 60 VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ VERSRTDPNM LVITYTSEHN 120 HPWPTQRNAL AGSTRAHPHS KHHHNHHSNN PPSSSASAGA PKKKDVDKPS TSSSNTNNKQ 180 ACSMSSNDND NEADVDHHHH HHHQSQTTSM SDCVEFSNSY RPTLMDNAAA PDQDFFAGLD 240 EIEADDPLQM LLKDNGKDEE ISVGGGLEPL FSSMFDWSTS SASAHDHTDK RDIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-26	38	125	2	80	Disease resistance protein RRS1
5w3x_D	2e-26	38	125	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10038426

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583599.1	2e-90	LOW QUALITY PROTEIN: probable WRKY transcription factor 14
Swissprot	O64747	2e-80	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	G3FF80	5e-89	G3FF80_9ROSI; WRKY transcription factor 14-1 (Fragment)
STRING	Lus10038426	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5430	34	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	3e-76	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Lus10038426

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]