PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038409
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LSD
Protein Properties Length: 338aa    MW: 36781.8 Da    PI: 8.1173
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038409genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.86.5e-12194217124
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                  C+gCr +L YPrGA++V+CalC+t
  Lus10038409 194 CSGCRSVLLYPRGASNVCCALCNT 217
                  ***********************8 PP

2zf-LSD148.41.5e-15233257125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  CggCrtlL+Y+rGA+sVRC++C+tV
  Lus10038409 233 CGGCRTLLMYTRGATSVRCSCCHTV 257
                  ************************9 PP

3zf-LSD144.32.9e-14271295125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Crt+L+YP GApsV+Ca+C+ V
  Lus10038409 271 CGNCRTMLMYPEGAPSVKCAVCHYV 295
                  **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.9E-12191221IPR005735Zinc finger, LSD1-type
PfamPF069434.2E-10194217IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.5E-17230259IPR005735Zinc finger, LSD1-type
PfamPF069436.4E-13233257IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.30.40.109.7E-4247298IPR013083Zinc finger, RING/FYVE/PHD-type
TIGRFAMsTIGR010535.3E-14268296IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-13271295IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRERLFVHLR GLPQIVESWN RPEESDPQHS QFARSLTRVT TISDHSIDRV LSLLGETTDF  60
CLASPLLLAI NVYPDRAFTV CCSFQEVGYL QRVLSRTLHE SDVKAIFRQV VVIFHSQISE  120
AFSRLDISTP QAKDRNSPIS AILTRRVLPL QIQTLFSPAT AITVVILCCG DTFVFLDFLL  180
ALIFLFCMQS QLVCSGCRSV LLYPRGASNV CCALCNTLTA VPAPGLELAQ IICGGCRTLL  240
MYTRGATSVR CSCCHTVNLA PVSSQIAHIN CGNCRTMLMY PEGAPSVKCA VCHYVTDAGM  300
GNVRVQPPVN RPNSAGSAVS YTASVSNVVV GVTTDKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038409
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Q3ANC07e-77A0A1Q3ANC0_CEPFO; Snf7 domain-containing protein/zf-LSD1 domain-containing protein
STRINGLus100384090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-56LSD family protein