PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LSD | ||||||||
Protein Properties | Length: 338aa MW: 36781.8 Da PI: 8.1173 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36.8 | 6.5e-12 | 194 | 217 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCr +L YPrGA++V+CalC+t Lus10038409 194 CSGCRSVLLYPRGASNVCCALCNT 217 ***********************8 PP | |||||||
2 | zf-LSD1 | 48.4 | 1.5e-15 | 233 | 257 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV Lus10038409 233 CGGCRTLLMYTRGATSVRCSCCHTV 257 ************************9 PP | |||||||
3 | zf-LSD1 | 44.3 | 2.9e-14 | 271 | 295 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+ V Lus10038409 271 CGNCRTMLMYPEGAPSVKCAVCHYV 295 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.9E-12 | 191 | 221 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.2E-10 | 194 | 217 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-17 | 230 | 259 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.4E-13 | 233 | 257 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 9.7E-4 | 247 | 298 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 5.3E-14 | 268 | 296 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-13 | 271 | 295 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MRERLFVHLR GLPQIVESWN RPEESDPQHS QFARSLTRVT TISDHSIDRV LSLLGETTDF 60 CLASPLLLAI NVYPDRAFTV CCSFQEVGYL QRVLSRTLHE SDVKAIFRQV VVIFHSQISE 120 AFSRLDISTP QAKDRNSPIS AILTRRVLPL QIQTLFSPAT AITVVILCCG DTFVFLDFLL 180 ALIFLFCMQS QLVCSGCRSV LLYPRGASNV CCALCNTLTA VPAPGLELAQ IICGGCRTLL 240 MYTRGATSVR CSCCHTVNLA PVSSQIAHIN CGNCRTMLMY PEGAPSVKCA VCHYVTDAGM 300 GNVRVQPPVN RPNSAGSAVS YTASVSNVVV GVTTDKK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038409 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Q3ANC0 | 7e-77 | A0A1Q3ANC0_CEPFO; Snf7 domain-containing protein/zf-LSD1 domain-containing protein | ||||
STRING | Lus10038409 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-56 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10038409 |